Query= MSMg01no107_b10.b1 MSMg01no107_b10.b1 CHROMAT_FILE:
MSMg01no107_b10.b1 PHD_FILE: MSMg01no107_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:27 2005
(338 letters)
>mm_chr4_23438514_23439249
Length = 736
Score = 576 bits (298), Expect = e-169
Identities = 326/336 (97%), Gaps = 4/336 (1%)
Strand = Plus / Plus
Query: 1 acttgaaaatctcatcatcaaagtcttctcaaaaatgcttgaaagaatgagcaacttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaaaatctcatcatcaaagtcttctcaaaaatgcttgaaagaatgagcaacttttt 260
Query: 61 aaatgtatgttttgaatcacttggctaatatattaagtgatctcaaattgcgcttgacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgtatgttttgaatcacttggctaatatattaagtgatctcaaattgcgcttgacaa 320
Query: 121 cactggtataacttgtagttccggggaacaaacttgttttgctaaaaagaaa-tcaaatt 179
|||| ||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct: 321 cactagtataacttgtagttccggggaacaaacttgttttactaaaaaaaaaatcaaatt 380
Query: 180 gtaaatttgcctgtgtctcttatctatgcattcatttaaaatccaccccatcctattatg 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaatgtgcctgtgtctcttatctatgcattcatttaaaatccaccccatcctattatg 440
Query: 240 aataatactttctagctattttatgatccatgtttttgctactatatgcacaaaagtaaa 299
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 441 aataatactttctagctattttatgatccatgtttttgctacaaaatgcacaaaagtaaa 500
Query: 300 taggccaatgtgaaacagttttagaaatacactaca 335
||| ||||||||||| |||||||||||||||||||
Sbjct: 501 tag-ccaatgtgaaa--gttttagaaatacactaca 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 736
Length adjustment: 9
Effective length of query: 329
Effective length of database: 727
Effective search space: 239183
Effective search space used: 239183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_b10.g1 MSMg01no107_b10.g1 CHROMAT_FILE:
MSMg01no107_b10.g1 PHD_FILE: MSMg01no107_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:27 2005
(665 letters)
>mm_chr4_23545512_23546582
Length = 1071
Score = 909 bits (470), Expect = 0.0
Identities = 521/542 (96%), Gaps = 8/542 (1%)
Strand = Plus / Minus
Query: 1 ccagagttatatagtatgaccctgtctcacctatacaaataattcttaattaatattttt 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 541 ccagagttatatagtatgaccctgtctca-ctaaacaaataattcttaattaatattttt 483
Query: 61 tagtgtttttacagtacagatttatttttaaaagctttcttctgtaatggaattaattct 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 482 tagtgtttttacagtacagatttatttttaaaagctttcttcagtaatggaattaattct 423
Query: 121 tatttgtctaccaacacatgcagattaaacactttatcttctttcagaaatgccacacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatttgtctaccaacacatgcagattaaacactttatcttctttcagaaatgccacacac 363
Query: 181 ttatttgctactttaggaaaaaaaa-------agagaacgtgaaaactttgctttagccc 233
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 362 ttatttgctactttaggaaaaaaaaaaaaaagagagaacgtgaaaactttgctttagccc 303
Query: 234 ttttataaaaatgactataattcaaaacattttcactcaatgatacattctttgtcccta 293
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 302 ttttataaagatgactataattcaaaacattttcactcaataatacattctttgtcccta 243
Query: 294 tattatagtaataattactgcaacaggaataagatccacatttgtatcagttgtttctgt 353
||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 242 tattatagtaataattactacaacaggaaaaagattcacatttgtgtcagttgtttctgt 183
Query: 354 ttgataaaacaccaagaccaaggttacttataaatgaaagtggttacttagaacagcaca 413
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 182 ttgataaaacaccaagaccaaggttacttataaatgtaagtggttacttagaacagcaca 123
Query: 414 cattgagagtccataatggtggtgctaaggcatggcagctagaacaactgagaacgcaca 473
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 122 cattgagagtccataatggtggcgctaaggcatggcagctagaacaactgagagcgcaca 63
Query: 474 cctcaaactgccagcatgatgcagagagagccaacggggaatgggcatggcttttggaat 533
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 62 cctcaaactgccagcatgatgcagagagagccaatgaggaatgggcatggcttttggaat 3
Query: 534 ct 535
||
Sbjct: 2 ct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1071
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1061
Effective search space: 694955
Effective search space used: 694955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
