Query= MSMg01no108_c02.b1 MSMg01no108_c02.b1 CHROMAT_FILE:
MSMg01no108_c02.b1 PHD_FILE: MSMg01no108_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:52 2005
(330 letters)
>mm_chr4_98524524_98525253
Length = 730
Score = 499 bits (258), Expect = e-145
Identities = 273/278 (98%), Gaps = 2/278 (0%)
Strand = Plus / Minus
Query: 17 gaattctcagcacactctaccatcttttcttcctctcctgccgtttctgtcactgagaaa 76
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattctcaccacactctaccatcttttcttcctctcctgccgtttctgtcactgagaaa 405
Query: 77 gatgcttgatgagaatcaggtttggcttttattcacttagatgacttttttattttagtt 136
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 404 gatgcttgatgagaatcaggtttggtttttattcacttagatgacttttttattttagtt 345
Query: 137 ttggtaagactgtaggtggtggtgtaaattccaccaagagtctgatacatttgtctcgtc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttggtaagactgtaggtggtggtgtaaattccaccaagagtctgatacatttgtctcgtc 285
Query: 197 ttcatgtcattatgtattgatgactacatagagcatttcatgtagactgcaaagtggcgt 256
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 284 ttcatgtcattatgtattgatgactacatagagtatttcatgtagactgcaaagtggcgt 225
Query: 257 ctatccagttatttatttatttatttatttatt-attt 293
||||||||||||||||| ||||||||||||||| ||||
Sbjct: 224 ctatccagttatttatt-atttatttatttatttattt 188
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_c02.g1 MSMg01no108_c02.g1 CHROMAT_FILE:
MSMg01no108_c02.g1 PHD_FILE: MSMg01no108_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:52 2005
(506 letters)
>mm_chr4_98422705_98423610
Length = 906
Score = 948 bits (490), Expect = 0.0
Identities = 502/506 (99%)
Strand = Plus / Plus
Query: 1 aaagccgaagacgttttgaatttctggatgactccactgcagcctgcactctgcacccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagccgaagacgttttgaatttctggatgactccactgcagcctgcactctgcacccca 260
Query: 61 tgtagtgtgggggggcttggcctaaggcaaaacactaccgagcatcctaatgagcagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagtgtgggggggcttggcctaaggcaaaacactaccgagcatcctaatgagcagaat 320
Query: 121 tatatgatgggaatgtactgtgcatatttgacatagtttctgtcttcaatggtgaccctc 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tatatgatgggaatgtactgtgcatatttgacatagtttctgtctccaatggtgaccctc 380
Query: 181 tggctgtaaccccggccctctctcagggcaagcggggagtccagaaaaggaaccttttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctgtaaccccggccctctctcagggcaagcggggagtccagaaaaggaaccttttgt 440
Query: 241 tcctggttgctaattcttctgcagctccttcggccccagggacctgccaggctctgagtg 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tcctggttgctaattcttctgcagctccttcggccccagggacctgcccggctctgagtg 500
Query: 301 ggcccgcagaagctctgcgatttccacgtgggcaggtgaattcagaacgagggacaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcccgcagaagctctgcgatttccacgtgggcaggtgaattcagaacgagggacaaagc 560
Query: 361 tgtttggccagcctgcaggaaagaaaaaaagaaagaaaaatcatcctatctgcctatcca 420
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcggccagcctgcaggaaagaaagaaagaaagaaaaatcatcctatctgcctatcca 620
Query: 421 ctcagtgggaagagtgggagcattgttaaaaaggatgttaggaacgtcaggtgaccctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcagtgggaagagtgggagcattgttaaaaaggatgttaggaacgtcaggtgaccctgg 680
Query: 481 aggggatgtgactcaaatggcatggg 506
||||||||||||||||||||||||||
Sbjct: 681 aggggatgtgactcaaatggcatggg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
