BAC Information

Click to search

BAC

Clone NameMSMg01-108D10
Chromosome4 (Build37)
Map Location 145,016,163 - 145,016,487
singlet/doubletsinglet
Overlap genenone
Upstream gene1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282
Downstream gene9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108D10.T7 (MSMg01no108_d10.b1)MSMg01-108D10.TJ (MSMg01no108_d10.g1)
ACCAG321721AG321722
length720711
length of high quality
(start - end)
317 (43 - 359)258 (80 - 337)
definitionCHROMAT_FILE: MSMg01no108_d10.b1 PHD_FILE: MSMg01no108_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:59 2005CHROMAT_FILE: MSMg01no108_d10.g1 PHD_FILE: MSMg01no108_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCTTTTCCCAGGCAAACCTTATACTAATGCCAAAAGGATAACATTAT
GTAAAAGGCAAAGAAGAGAAACACTAGAAAGACATCATACAAAGTTGGTG
TACATCTACACCGCAAACAGGTAAACAGAAGAAAATATATGGCCAAAGTC
TTCCAGTGAAAAACAGACAGCATATTCAACAAATGGTGTTGGTTCAAGTG
TCAGTCCACATGTATAAGAATGCCAATTGATTCACTCCTACTGCCTTGTA
CAATGCTCAAGTCAACGTGGATCAAGAACCTCCACATAAAACCAGATACA
CTGAATCTAATAGAATAGAAGGGGCGAAAAGCCTTCAACACATCTGCAAA
GGGTAAATTTTCCTGAACAGAACAGAAATGGCTCAAGTTCAAAGGTCAAC
TATGGACAAATGGGATCTCATAAACTTGAAAAACTTCCTGTAAGGCAAAG
GACACTGTCAATAGGACCTAACAGCAACCCCCAAAATGGTAAAAGATCTT
AACCATTCCTCTGTCTGACAGAGGGCAAATGCACTCTATATAATATGACC
TCATGAAGTTAGAACTCTAAAAAACCCATAACCCTATTAAAAATAGGGGA
TGCCCTCCTGGTAAGAGCTACCGACACAAAATTTGGAATCTGAATATTGA
AGAAAGGCCCTCCCCAATCC
NCCCCGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTAATCCACCTACTTATTT
CTTTCTATACCAGTACCATACAAATTTTTATTACTATTTTTCTGCCATAC
ATCTTTAAGTTACAGAAATTGATAGCTCCAGATTTTTTTTGTTGTTCAAG
AATATTTTATCTATCCTGTGGTTTTTGTTTTGTTTACTGTTCCATACAAC
ATTGAGAATATTTCTTTCAAGATCTGTGAAGATTTGTGCTAAATTTTTGA
TAAGAATTGTACTGAGTGTCTAGATTGCTTTTTGGTAAGATGGACATATT
CATTATGTTAATCCTGTTGATACATGAACAAGGGAGATCTTTTCATGTTC
TGATATCTTCCTGTTTCTTTCTTAAGATACTTTAAGTTCTTCTCCTACAG
GTTTTCACTTGCTTGTTTAGAGGTAACTGAAGGCATTTCATTTTGCTTGT
GGCTAAAGTGGAGGGTTCTGTTTCCATAACTTCTTTTTCAACCCTTTTAA
TCAACTGTGCGCAGCATGTCTAAGGCTTTCTTTAACTCAATTGTGTACGC
AGACACTTTGTTAAAATGTTTATCATCTGCAATTTTTCGCTAGAATTTTC
TGCCTCACCTATATACCTTATCATAATATCTGAGTTCCTTCTTTCCCAAA
TTGTATTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_d10.b1 MSMg01no108_d10.b1 CHROMAT_FILE:
MSMg01no108_d10.b1 PHD_FILE: MSMg01no108_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:59 2005
         (317 letters)



>mm_chr4_145016139_145016855
          Length = 717

 Score =  424 bits (219), Expect = e-123
 Identities = 294/327 (89%), Gaps = 15/327 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcttttccc--aggcaaaccttatactaatgccaaaaggataacattatgta 61
           |||||||||||||  ||  ||||||||||||||||| |||||||||||||| |||| |||
Sbjct: 349 ggaattcttcttt--ccttaggcaaaccttatactattgccaaaaggataatattaagta 292

                                                                       
Query: 62  aaaggcaaagaagagaaacactagaaagacatcatacaaagttggtgtacatctacaccg 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 291 aaaggcaaagaagaaaaacactagaaagacatcatacaaagttggtgtacatctacaccc 232

                                                                       
Query: 122 caaacaggtaaacagaagaaaatatatggccaaagtcttccagtgaaaaacagacagcat 181
           ||||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct: 231 caaacagataaacagaagcaaatatatggccaaagactcccagtgaaaaacagacagcat 172

                                                                       
Query: 182 attcaacaaatggtgttggttcaagtgtcagtccacatgtataagaatgccaattgattc 241
           ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| 
Sbjct: 171 attcaacaaatggtgctggttcaagtgtcagtccacatttagaagaatgccaattgattt 112

                                                                       
Query: 242 actcctactgccttgtacaatgctcaagtcaacgtggatcaagaacctccacataaaac- 300
           |||| |||  ||||||||||||||||||||||| ||||||||||||||||||||||||  
Sbjct: 111 actcttaccaccttgtacaatgctcaagtcaacatggatcaagaacctccacataaaatt 52

                                      
Query: 301 ----------cagatacactgaatcta 317
                     |||||||||||||||||
Sbjct: 51  atattagattcagatacactgaatcta 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)