Query= MSMg01no108_d12.b1 MSMg01no108_d12.b1 CHROMAT_FILE:
MSMg01no108_d12.b1 PHD_FILE: MSMg01no108_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:00 2005
(485 letters)
>mm_chr4_102245642_102246526
Length = 885
Score = 884 bits (457), Expect = 0.0
Identities = 475/481 (98%)
Strand = Plus / Plus
Query: 5 gaattccagagctgacagggagcataaatgtaacgccttacagagggtggaagactgcga 64
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagctgaaagggaacataaatgtaacgccttacagagggtggaagactgcga 264
Query: 65 agaagacctttggaactggaggcgcatggttccaattctgccagtctcacttgctagtct 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagagctttggaactggaggcgcatggttccaattctgccagtctcacttgctagtct 324
Query: 125 ttttactcaactgcccagagattcagttttacagtatagaggtgggtctcatctcaccag 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttacttaactgcccagagattcagttttacagtatagaggtgggtctcatctcaccag 384
Query: 185 gtttagtatccccaaagcgcttaggaaagcgcctgccaggaagcaggaatcctgtgagcg 244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttagtatccccaaagcgcttaagaaagcgcctgccaggaagcaggaatcctgtgagcg 444
Query: 245 atcccttactaacacctacttcatggttgcaaaaccaaatctgtgtccctacttgtgttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcccttactaacacctacttcatggttgcaaaaccaaatctgtgtccctacttgtgttt 504
Query: 305 cagagctgacccacaggcttttatttacaaagtctgaacttgacttcagagcacagatgg 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagagctgacccaaaggcttttatttacaaagtctgaacttgacttcagagcacagatgg 564
Query: 365 cagagcctctgtcctgtgaagtgagtgttatttggtaacataggtgccagtctgtggaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagagcctctgtcctgtgaagtgagtgttatttggtaacataggtgccagtctgtggaga 624
Query: 425 aggtgaagaaaggcctgtctggtagggggaaagcaaatggcctttagggtttcttacacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggtgaagaaaggcctgtctggtagggggaaagcaaatggcctttagggtttcttacacc 684
Query: 485 t 485
|
Sbjct: 685 t 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_d12.g1 MSMg01no108_d12.g1 CHROMAT_FILE:
MSMg01no108_d12.g1 PHD_FILE: MSMg01no108_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:00 2005
(508 letters)
>mm_chr4_102310195_102311104
Length = 910
Score = 806 bits (417), Expect = 0.0
Identities = 442/451 (98%), Gaps = 2/451 (0%)
Strand = Plus / Minus
Query: 1 caaagacacactaaggacagtgtgaatggaatgctggtctccttcaaattccagctccat 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 451 caaagacacactaaggacagtgtgaatggaatgctggtctccttcaaataccagcaccat 392
Query: 61 ccataaggttattagacataagtcaaaccccttaagcttcctggacccacagct--gcct 118
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 391 ccatagggttattagacataagtcaaaccccttaagcttcctggaccctcagctaggcct 332
Query: 119 gtgttaagtgggggctatttgttattgtgagtttcatgaagcacaaagaagagactgcat 178
|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 331 gtgttaagtgggggctatttgttattgtgagtttcatgaagcccgaaggagagactgcat 272
Query: 179 gggaaagattcttttctttttttccagtgggacttgtatttcacttcaaggaaggaagct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gggaaagattcttttctttttttccagtgggacttgtatttcacttcaaggaaggaagct 212
Query: 239 ggcactcagctcagggctctgtttcatgttaatcagctttgtgtcctcaaattctggcct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggcactcagctcagggctctgtttcatgttaatcagctttgtgtcctcaaattctggcct 152
Query: 299 actgcctgggttactagagctcagcaaatgtttattgatgaagaaatgacagagggttgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 actgcctgggttactagagctcagcaaatgtttattgatgaagaaatgacagagggttgt 92
Query: 359 aatcactttgcctggaatttctttgatatttgattccaagaattggaaattacatctgaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 aatcactttgcctggaatttctttgatatttgattccaagaattggaaattacatctgaa 32
Query: 419 gtcatctgttccatgcctctacaactggcca 449
|||||||||||||||||||||||||||||||
Sbjct: 31 gtcatctgttccatgcctctacaactggcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 910
Length adjustment: 10
Effective length of query: 498
Effective length of database: 900
Effective search space: 448200
Effective search space used: 448200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
