TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCACATTCTTATCTGACTTACTCTCTGTTTTACCACTCTATTTCTCACCA
GCTATAAAATATGAGACTTTATTCCATACGGTGAACATCTACTCTAGGAT
TCAACTTATGGGCCCCCAATGGATGAGCTAGAGAAAGTACCCAAGGAGCT
AAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTA
CCCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT
TGGCCATCACTGGAAAGAGGCCCATTGGACTTGCAAACTTTATATGCCCC
AGTACAGGGGAACATCAGGGCCAAAAAGTGGGAGTGTGTGGGTAGGGGAG
TGTGGTGNNNNNNCCCCNNNTTTTTCTTTTTTTTTTTTTCTCTCTCCCTC
TCCTTCTCTTCCTTTTTTTCCCCCTTCTCTCCCTCTTTCCTCCTTTTTCT
CTCTTTTCTTTCCCCCCTCCCCCCCTTTTTCCTTTTCCCTTTTTTTTCTC
TCTTCCTTCCTCTCCTCTTCCCTTCTCTTTCTTTTTTCCCTTCCTCTTCC
CCTTTTTTCTCTCCCCCCTTTTTTTTTCTTTTCCCTTTTCTCTTTCCCCC
CTTTTTTCCCTTTTTTTTCTTTTTTCTTTTCTCTCCTTTATCTCTTCCCC
CCCCCTATTCTTCATTCCN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACATAAACATGATAAAA
GCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCT
GGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCGATTTTCTC
CCTACATTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACGA
CAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATC
ACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCA
CCAGAGAATTCCTAAAACTGATAAACAGCTTCGGTGAAGTAGCTGGATAT
AAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACA
GGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATA
ATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTAT
GGTAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAG
ATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAA
TGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCTCATCAAA
ATT

Query= MSMg01no108_i06.b1 MSMg01no108_i06.b1 CHROMAT_FILE:
MSMg01no108_i06.b1 PHD_FILE: MSMg01no108_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:24 2005
         (367 letters)



>mm_chr4_27496966_27497732
          Length = 767

 Score =  669 bits (346), Expect = 0.0
 Identities = 359/364 (98%), Gaps = 2/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcacattcttatctgacttactctctgttttaccactctatttctcaccagctat 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcacattcttatttgacttactctctgttttaccactctatttctcaccagctat 265

                                                                       
Query: 66  aaaatatgagactttattccatacggtgaacatctactctaggattcaacttatgggccc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaatatgagactttattccatacggtgaacatctactctaggattcaacttatgggccc 325

                                                                       
Query: 126 ccaatggatgagctagagaaagtacccaaggagctaaagggatctgcaaccctataggtg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccaatggatgagctagagaaagtacccaaggagctaaagggatctgcaaccctataggtg 385

                                                                       
Query: 186 gaacaacattatgaactaaccagtacccccagagctcttgactctagctgcatatgtatc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaacaacattatgaactaaccagtacccccagagctcttgactctagctgcatatgtatc 445

                                                                       
Query: 246 aaaagatggcctagttggccatcactggaaagag--gcccattggacttgcaaactttat 303
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 446 aaaagatggcctagttggccatcactggaaagagaggcccattggacttgcaaactttat 505

                                                                       
Query: 304 atgccccagtacaggggaacatcagggccaaaaagtgggagtgtgtgggtaggggagtgt 363
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 506 atgccccagtacaggggaacgtcagggccaaaaagtgggagtgtgtgtgtaggggagtgt 565

               
Query: 364 ggtg 367
           ||||
Sbjct: 566 ggtg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)