BAC Information

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BAC

Clone NameMSMg01-108L06
Chromosome4 (Build37)
Map Location 10,157,671 - 10,158,128
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108L06.T7 (MSMg01no108_l06.b1)MSMg01-108L06.TJ (MSMg01no108_l06.g1)
ACCAG322080AG322081
length721693
length of high quality
(start - end)
293 (66 - 358)458 (85 - 542)
definitionCHROMAT_FILE: MSMg01no108_l06.b1 PHD_FILE: MSMg01no108_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:39 2005CHROMAT_FILE: MSMg01no108_l06.g1 PHD_FILE: MSMg01no108_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGGCATACCGAATGGCTGAGAAGCACCTGAAAATATGTTCA
ACACCCTTATTCATCAGGGAAATGCAAATCAAAGCAACCCTAGATTCCAC
CTCACACCAGTCAGAATTGCTAAGATTAAAAATTCAGGTGAAAGCAGATG
CTGTCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTTTTGGTGGGATT
GCAAGCTTTTACACCCACTCTGGAAATTAGTCTGGCCATTCCTCAGAAAA
TTGGACATAGTACTACCGAATGATCCCGCAATACCTCTCCTGGGCATATA
TCCAGAATATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCATCCCTATTTATAATAGCCAGAAGTTGGAAAGAACCCATATGCCTC
TCAACAGAGGAATGGATACAGAAAATGTGCCACCTTTTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTCTGAAATTTCCTAGGCTAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTATACCAATCCCAAAAGA
ACTGCATAATGTGTACTCCCTGATACTCGGACTTGTATTTCCCAGAAATT
TAAAATCCCTATTATATACGATCCCCTCTTGCTATCTGCTCGATAATCCC
GCAAGAATGGAGAACCAATTT
GCCCTNNTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGGGAAGCCACCT
GGTCAAACCTCTTGCCTTTCAGTCATGGTTAACCAGGTCATATGAGAAGG
AAGGGTGATTTGAATGAGCCCAGATGTTCATTTAAACTACAACCAGCCAT
AACACTTGAGCCATTTTTACTTTGCAGTCATTTCTTTTCACGTCATAGAA
ATGTTCCAAAGAGATCTAAGGAGACAGCATGTCTTATAAGATGACAATTG
CAAATGGCAGTGAATAGCAAGCACGATAATAACCTGTCATGTTTAACTGA
ATGCTACAGCAAAAGCAGTTGCATAGCAGCAAGCAGATGTCAGCTAACAG
GTAGTTTGTGGCTAGCTCAATGGATACAGGTCACCATATAATCTGGAAAA
GTGTTTTAAAAATTACTAGCCATGGTAGAACATGGATGGTAAATATACAT
TCAGGATGGATTTGGATACATGAACGATTTACTGTTTGAGAGCTTTTAAA
GGTACCATTGACGCCTCAATCAAAAGATTTGATATTTTTGGCAAGCAAAG
CAGGATATGATTGCGCAGAGGATTTTAAAACTAGAATTCACTCTTTTTAT
TTTTTTCAAAAAGAATACCGCATTTGGCAGGTTTCTGAATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_l06.g1 MSMg01no108_l06.g1 CHROMAT_FILE:
MSMg01no108_l06.g1 PHD_FILE: MSMg01no108_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:39 2005
         (458 letters)



>mm_chr4_10157471_10158328
          Length = 858

 Score =  855 bits (442), Expect = 0.0
 Identities = 454/458 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggggaagccacctggtcaaacctcttgcctttcagtcatggttaaccaggtcatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ccaggggaagccacctggtcaaacctcttgcctttcagtcatggttaaccaggtcatatg 599

                                                                       
Query: 61  agaaggaagggtgatttgaatgagcccagatgttcatttaaactacaaccagccataaca 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 598 agaaggaagggtgatttgaatgagcccagatgttcatgtaaactacaaccagccataaca 539

                                                                       
Query: 121 cttgagccatttttactttgcagtcatttcttttcacgtcatagaaatgttccaaagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cttgagccatttttactttgcagtcatttcttttcacgtcatagaaatgttccaaagaga 479

                                                                       
Query: 181 tctaaggagacagcatgtcttataagatgacaattgcaaatggcagtgaatagcaagcac 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 478 tctaaggagacagcatgtcttaaaagatgacaattgcaaatggcagtgaatagcaagcac 419

                                                                       
Query: 241 gataataacctgtcatgtttaactgaatgctacagcaaaagcagttgcatagcagcaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gataataacctgtcatgtttaactgaatgctacagcaaaagcagttgcatagcagcaagc 359

                                                                       
Query: 301 agatgtcagctaacaggtagtttgtggctagctcaatggatacaggtcaccatataatct 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 358 agatgtcagctaacaggtagtttgtggctagctcaatggatacaggtcaccatacaatct 299

                                                                       
Query: 361 ggaaaagtgttttaaaaattactagccatggtagaacatggatggtaaatatacattcag 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 298 ggaaaagtgttttaaaaattactagccatggtagaacatggatggcaaatatacattcag 239

                                                 
Query: 421 gatggatttggatacatgaacgatttactgtttgagag 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gatggatttggatacatgaacgatttactgtttgagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)