Query= MSMg01no108_m04.b1 MSMg01no108_m04.b1 CHROMAT_FILE:
MSMg01no108_m04.b1 PHD_FILE: MSMg01no108_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:43 2005
(641 letters)
>mm_chr4_144494308_144495348
Length = 1041
Score = 1208 bits (625), Expect = 0.0
Identities = 634/637 (99%)
Strand = Plus / Plus
Query: 5 gaattcgtgtaaacctggaaggaatcaacaaattctacaaagatgtcctctggcctccac 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgtgtaaagttggaaggaatcaacaaattctacaaagatgtcctctggcctccac 264
Query: 65 acatatgccacagcatacatgccccaaaacacatacaccatgcatatatacatacaataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatatgccacagcatacatgccccaaaacacatacaccatgcatatatacatacaataa 324
Query: 125 tttctttgagagaataagatggaaggctcagtggttaaaaatgcttgttgctcttgcaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttctttgagagaataagatggaaggctcagtggttaaaaatgcttgttgctcttgcaga 384
Query: 185 ggacccaggttcagttcgtagcacccacatgatgtctcacaagtgtctgttgccagttcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggacccaggttcagttcgtagcacccacatgatgtctcacaagtgtctgttgccagttcc 444
Query: 245 aggagatcagatgccctcttctaggctcttctggcacaggacatgcacatggtatatatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggagatcagatgccctcttctaggctcttctggcacaggacatgcacatggtatatatt 504
Query: 305 ctgcacgtgcacctatatgcaagcaaatatttcatatataaaacataaaagaaaaataaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgcacgtgcacctatatgcaagcaaatatttcatatataaaacataaaagaaaaataaa 564
Query: 365 taaatctttaaaaagtattttatgtgtatatgtgctcgtattctttgagccctctcccta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaatctttaaaaagtattttatgtgtatatgtgctcgtattctttgagccctctcccta 624
Query: 425 gcacatcgtaggttttgaatggcagatctatgttgcctgccacccaggacaggcagaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcacatcgtaggttttgaatggcagatctatgttgcctgccacccaggacaggcagaaga 684
Query: 485 aggctcatggcttcccagtagtgttgagtgttgctgatgttagtgctgttgtaaccagac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggctcatggcttcccagtagtgttgagtgttgctgatgttagtgctgttgtaaccagac 744
Query: 545 gaccgcactatatcctccacttggtttccctctttaaggtctctgtgattacgttttttt 604
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaccgcactatgtcctccacttggtttccctctttaaggtctctgtgattacgttttttt 804
Query: 605 atggttgcttgagcagcgagaggccttgtcatcctgt 641
|||||||||||||||||||||||||||||||||||||
Sbjct: 805 atggttgcttgagcagcgagaggccttgtcatcctgt 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_m04.g1 MSMg01no108_m04.g1 CHROMAT_FILE:
MSMg01no108_m04.g1 PHD_FILE: MSMg01no108_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:43 2005
(570 letters)
>mm_chr4_144617980_144618950
Length = 971
Score = 1096 bits (567), Expect = 0.0
Identities = 570/571 (99%), Gaps = 1/571 (0%)
Strand = Plus / Minus
Query: 1 tgggaaga-aaggggacctgcagggtgggcagaaggaagaagcaaggctagatgaacttt 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgggaagacaaggggacctgcagggtgggcagaaggaagaagcaaggctagatgaacttt 712
Query: 60 aatgacctttaacccccaggattccacaggactttgccagcttcacttctacaagcagaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aatgacctttaacccccaggattccacaggactttgccagcttcacttctacaagcagaa 652
Query: 120 aggtgtatgccttgggtctctgtgtgagttctgtttcattctggaaggcattttcccgca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aggtgtatgccttgggtctctgtgtgagttctgtttcattctggaaggcattttcccgca 592
Query: 180 gagataataaatctctctccgagttctctctctaaacactcacgttgagggagatagcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gagataataaatctctctccgagttctctctctaaacactcacgttgagggagatagcac 532
Query: 240 agcacaccttggttggctgtactcacactcctggtatcttctgggaagtagggattgtag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agcacaccttggttggctgtactcacactcctggtatcttctgggaagtagggattgtag 472
Query: 300 ctgtcctgctgggaggactgaactggctaagtggtttcacaggtgctgtcacggagtagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctgtcctgctgggaggactgaactggctaagtggtttcacaggtgctgtcacggagtagc 412
Query: 360 gccctctgctagctggttttggtgggcccaggtactgttccaaagcatatgctatggtca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gccctctgctagctggttttggtgggcccaggtactgttccaaagcatatgctatggtca 352
Query: 420 gagcaactggcagttttctctcaactgcactgctccaaagttgcctccaacttcagcttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gagcaactggcagttttctctcaactgcactgctccaaagttgcctccaacttcagcttc 292
Query: 480 actcattggaagaaactggggactgttctcttcctaaagccttgagccccatccgggttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 actcattggaagaaactggggactgttctcttcctaaagccttgagccccatccgggttc 232
Query: 540 acagcaggggctctgcctgatgtcagatggt 570
|||||||||||||||||||||||||||||||
Sbjct: 231 acagcaggggctctgcctgatgtcagatggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
