AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGTCCGCGGAATCA
TGGTTTCTAGCTGACCACTTTGTATTGCATAATCAATGGGAGACTCGTGC
CTTGGACATACTAATTCTCTCTTTCAATAGTTATTAGTTACCTATAATTC
TTTGTCCTCACTTGGACCCACTTTAGGCTTTGCTTTTCAATAGTTTTATT
TTGATTTGCATGCACATGCATTTTGGTTTTATTTATTTGTTTTTACTCTT
CCAGTTTTATGCTTCAAATCTATGAGTTGGTAAGCTTCGTGTAGTTTTTA
GAGACTTTTACCTTGTGTAAAAATTTTTGATGAAAATGAAGGCAAAACAC
ACCCAAACATATGGGATACAATGAAAGTAGTACTAAAAGGAAAATTTAGA
GCAATAAGTGCCTTCACAAATAAACTGGAGAGATCTTATACTAGGAACTT
AACCGTACACCTGAAAGCTCTATAGCAAAAGGAAGCTAATACATTCAAAC
AGAATGAATGATCGGAAATAGTCAAAGTCAGGGCTGAAATAAACCAAGTA
GAAATAAAGGGAACAATACGATTCAACAAAACCAAAAGATGATTCTTTGA
GAAAATCAACAAGATAGAAAAATTCTTAGCCAAACTAACTAAAGGCTCAG
AGACATTATTCACATTTAGAAAGTCAGAAATGAAAAGAGTGACATAAAAA
CAGAAACTGAAGAAATA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACAAAATTGTCCAAGAACTAAAAATGGAAA
TAGAAACAATAAAGAAAACACAAACTAACGCAACCCTGAGATGGGTTACC
TAGAAAAGAGAACAGGAATTATAAATGCAAGCCTCACCAACAGAAGATAA
GAGATGAACAAGATAATCTCAGGCATAGAAAATACCATAGAAGAAAACAC
TATATCAGTCAAAAACAATACCAAATGTAAAAAGTATCTAACTCCAAAAA
TTCAGGAAATTTGGGACACTACGAAAAGACCAAACCAAAGAATAATAGTA
ATAGAAGAGACTGAAGATACCCCGTTCAAAGGACTAAAATATATCTTCAA
CAAAAACAGAAGAGAACTTTTTTAACCTACGGAAAGATGGCTATAAATGT
ACAAGAAGCTAACAGAACAACAGGTAGATTGGACTAGAAAAAAATGCTCC
AACTATATAATAATAAAACATTATACAGATCAAAAAATAATAGCAGATGC
AAAGGAAAAAGGCCAAGAAACATATAAATGCAGACCTATCAGAAATAGAC
TACTTCTTAAGGAGATTCTAAAAACCCAGAAGATCCTGGACAGATGTTTG
CAGACCTTAAGAGACCACAGATGCCAGCCCATACAACAGTATCTAGCAAA
ACTTTCCATCAACATAT

Query= MSMg01no108_o15.b1 MSMg01no108_o15.b1 CHROMAT_FILE:
MSMg01no108_o15.b1 PHD_FILE: MSMg01no108_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:55 2005
         (657 letters)



>mm_chr4_18733155_18734211
          Length = 1057

 Score = 1042 bits (539), Expect = 0.0
 Identities = 560/567 (98%)
 Strand = Plus / Minus

                                                                       
Query: 10  tcatggtttctagctgaccactttgtattgcataatcaatgggagactcgtgccttggac 69
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 567 tcatggtttcaagctgaccactttgtattgcataatcaatgggagactcatgccttggac 508

                                                                       
Query: 70  atactaattctctctttcaatagttattagttacctataattctttgtcctcacttggac 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atactaattctctctttcaatagttattagttacctataattctttgtcctcacttggac 448

                                                                       
Query: 130 ccactttaggctttgcttttcaatagttttattttgatttgcatgcacatgcattttggt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccactttaggctttgcttttcaatagttttattttgatttgcatgcacatgcattttggt 388

                                                                       
Query: 190 tttatttatttgtttttactcttccagttttatgcttcaaatctatgagttggtaagctt 249
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 387 tttatttatttgtttttactcttccagttttatgcttcaaatctatgagttgttaagctt 328

                                                                       
Query: 250 cgtgtagtttttagagacttttaccttgtgtaaaaatttttgatgaaaatgaaggcaaaa 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgtgtagtttttagagacttttaccttgtgtaaaaatttttgatgaaaatgaaggcaaaa 268

                                                                       
Query: 310 cacacccaaacatatgggatacaatgaaagtagtactaaaaggaaaatttagagcaataa 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacacccaaacatatgggatacaatgaaagtagtactaaaaggaaaatttagagcaataa 208

                                                                       
Query: 370 gtgccttcacaaataaactggagagatcttatactaggaacttaaccgtacacctgaaag 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gtgccttcacaaataaactggagagatcttatactaggaacttaaccgtacacctgaaag 148

                                                                       
Query: 430 ctctatagcaaaaggaagctaatacattcaaacagaatgaatgatcggaaatagtcaaag 489
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 147 ctctatagcaaaaggaagctaatatattcaaacagaatgaataatcggaaatagtcaaag 88

                                                                       
Query: 490 tcagggctgaaataaaccaagtagaaataaagggaacaatacgattcaacaaaaccaaaa 549
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 87  tcagggctgaaataaaccaagtagaaatacagggaacaatacgactcaacaaaaccaaaa 28

                                      
Query: 550 gatgattctttgagaaaatcaacaaga 576
           |||||||||||||||||||||||||||
Sbjct: 27  gatgattctttgagaaaatcaacaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)