Query= MSMg01no109_c20.b1 MSMg01no109_c20.b1 CHROMAT_FILE:
MSMg01no109_c20.b1 PHD_FILE: MSMg01no109_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:18 2005
(554 letters)
>mm_chr4_39456571_39457524
Length = 954
Score = 1006 bits (520), Expect = 0.0
Identities = 544/552 (98%), Gaps = 2/552 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcttactatcaaaaatacgtgtgtaatatttttattgtttcaggattttgtgt 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ggaattctcttactat-aaaaatacgtgtgtaatatttttattgtttcaggattttgtgt 696
Query: 64 ttataaaccaatctatccagaaaa-tgttcaattctttgttcagagatttgggatgccca 122
|||||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||
Sbjct: 695 ttataaaccaatctatccagaaaactgatcaattctttgctcagagatttaggatgccca 636
Query: 123 tgtctggagaaagtatcaccttgtcctgctttgttttagaggcaagaagtagcctcaggt 182
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 635 tgtctggagaaagtatcaccttgtcctgctttgttttagaagcaagaagtagcctcaggt 576
Query: 183 ccaggcaatagattaataaacttcaggcacacagctcagaacataaattaaaaatacttt 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ccaggcaatagatgaataaacttcaggcacacagctcagaacataaattaaaaatacttt 516
Query: 243 gaacttctaaaggttaaaccacatggtttttgttttcatttttgttaccccccattcctt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaacttctaaaggttaaaccacatggtttttgttttcatttttgttaccccccattcctt 456
Query: 303 tcattacaatagctaacacagatggaaaccagctagttctaggaactgtgaacacaatac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcattacaatagctaacacagatggaaaccagctagttctaggaactgtgaacacaatac 396
Query: 363 aggaaagcacaagacaaggacgaagaaccaggataaagttcaagaatcctcaatgagtaa 422
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aggaaagcacaagacaaggaagaagaaccaggataaagttcaagaatcctcaatgagtaa 336
Query: 423 aaatgtgataagtatttgaaattcaaaactcattatcatggctaatgcacaaaagtattt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaatgtgataagtatttgaaattcaaaactcattatcatggctaatgcacaaaagtattt 276
Query: 483 tctagtaaactatgtcagttgaaaaggtaaggttttgttctcttgcatatgaagccagaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctagtaaactatgtcagttgaaaaggtaaggttttgttctcttgcatatgaagccagaa 216
Query: 543 tattctcttagg 554
||||||||||||
Sbjct: 215 tattctcttagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_c20.g1 MSMg01no109_c20.g1 CHROMAT_FILE:
MSMg01no109_c20.g1 PHD_FILE: MSMg01no109_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:18 2005
(585 letters)
>mm_chr4_39355429_39356413
Length = 985
Score = 1056 bits (546), Expect = 0.0
Identities = 576/586 (98%), Gaps = 1/586 (0%)
Strand = Plus / Plus
Query: 1 tttagaatactaagagacaactgctttggagaactgtctctctcaagcagaacatagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagaatactaagagacaactgctttggagaactgtctctctcaagcagaacatagaga 260
Query: 61 gagggagagctgtctagagatcctcgagagaaagcagatcaaagagaaagaaagcagaag 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggagagctgtctagagatcctggagagaaagcagatcaaagagaaagaaagcagaag 320
Query: 121 agagagaaagcaggctggaaagctgtctccagcagagcacaggcctccagcacaggtacc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 agagagaaagcaggctggaaagctgtctccagcagagcacaagcctccagcacaggtacc 380
Query: 181 aggtttggcttcaagttgtttatttttgcatctcccagacatcccttcctcggaacccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aggtttggcttcaagttgtttatttttgcatctcccagacatcccttcctcagaacccct 440
Query: 241 ctccaagctgatactggtcctggacaaataaataagtgctatgaatttgatacaaaatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccaagctgatactggtcctggacaaataaataagtgctatgaatttgatacaaaatat 500
Query: 301 ccctactctcttcctttattgtcattgagaaaggtcaacgattaaatttaacgtaaatat 360
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 501 ccctactctcttcctttaatgtcattgagaaaggtcaacgattaaatttaatgtaaacat 560
Query: 361 tttctcatgcagtccgctttacttcagatttttagaacaatgtcatgttataaaaacaag 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 tttctcatgcagtccgctttacttcagatttttagaagaatgtcatgttataaaaacaag 620
Query: 421 tagagtaaaataagttaaaaataaaaccacactttgaatgtttgctcttatggtttagaa 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagagtaaaataagttaaaaacaaaaccacactttgaatgtttgctcttatggtttagaa 680
Query: 481 tgccacggttaaggatgcaagatgaattgtacgaggg-cttctcaaatctaaaggaacaa 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 tgccacggttaaggatgcaagatgaattgtacgaggggcttctcaaatctaaaggaacaa 740
Query: 540 aggcagctacagaagtcctacggcctgggaccatgttaaaaaggat 585
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 aggcagctacagaagtcctacggcctgggaccatgttcaaaaggat 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
