Query= MSMg01no109_m15.b1 MSMg01no109_m15.b1 CHROMAT_FILE:
MSMg01no109_m15.b1 PHD_FILE: MSMg01no109_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:08 2005
(430 letters)
>mm_chr4_142178493_142179324
Length = 832
Score = 754 bits (390), Expect = 0.0
Identities = 420/430 (97%), Gaps = 2/430 (0%)
Strand = Plus / Plus
Query: 3 ggaattcagg-attatccgaaatcta-accattattttaaattattctagtgggcctcat 60
|||||||||| | || ||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 203 ggaattcaggaaataaacgaaatctacaccattattttaaattattctagtcggcctcat 262
Query: 61 gtacccggaagggaaggagcctgcatttcttccctttgcctggggggtgtggactgaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtacccggaagggaaggagcctgcatttcttccctttgcctggggggtgtggactgaacc 322
Query: 121 aattggctgggggaaggggtgctgagtctcttgcttgggggtgacggagacccatccccc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattggctaggggaaggggtgctgagtctcttgcttgggggtgacggagacccatccccc 382
Query: 181 aggggtcccagctttgatctatggttatagctctcacctggtgctttctaggcctgaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 383 aggggtcccagctttgatctatggttatagctctcacctggtgctttctaggccttaggg 442
Query: 241 aaggtttgattgagtcaaaacgataagtgtctcaggacttctttatggtcttttgttaat 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 aaggtttgattgagtcaaaacgataagtgtcacaggacttctttatggtcttttgttaat 502
Query: 301 caccaagcctggctaaaatcacctattgattgaccttatatgaaatctactttaacctgg 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 503 caccaagcctggctaaaatcacctattgattgaccttaaatgaaatctactttaacctgg 562
Query: 361 gaactccattaaaagaataattcaagaggccagctctgcttcagctcattgttaacctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaactccattaaaagaataattcaagaggccagctctgcttcagctcattgttaacctgc 622
Query: 421 ctgcccagga 430
||||||||||
Sbjct: 623 ctgcccagga 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 832
Length adjustment: 9
Effective length of query: 421
Effective length of database: 823
Effective search space: 346483
Effective search space used: 346483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_m15.g1 MSMg01no109_m15.g1 CHROMAT_FILE:
MSMg01no109_m15.g1 PHD_FILE: MSMg01no109_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:08 2005
(245 letters)
>mm_chr4_142274929_142275573
Length = 645
Score = 445 bits (230), Expect = e-129
Identities = 239/242 (98%)
Strand = Plus / Minus
Query: 4 cttggctacaaactactgcagagaagttgcccactgaagacactgctataggctccctgc 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttggctacaaactaccgcagagaagttgcccactgaagacactgctataggctccctgc 386
Query: 64 ctggttttctaaggtgaccccaggcttctgtcccccagggctacatatacatttctctgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggttttctaaggtgaccccaggcttctgtcccccagggctacatatacatttctctgt 326
Query: 124 gtaatgcttttgaaacctcaggctggttaaggagctgtttccgcatggagcattgtttag 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaatgcttttgaaacctcaggctggttaaggagctgtttccgcatggagcattgtttag 266
Query: 184 gctttgacagccacacctttgagaaatgtgctctgtttccattgattacgatgagaacca 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 gctttgacagccacacctttgagaaatgtgctctgttttcattgattacgatgagaacca 206
Query: 244 ca 245
||
Sbjct: 205 ca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
