Query= MSMg01no109_o05.b1 MSMg01no109_o05.b1 CHROMAT_FILE:
MSMg01no109_o05.b1 PHD_FILE: MSMg01no109_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:16 2005
(303 letters)
>mm_chr4_5086192_5086895
Length = 704
Score = 520 bits (269), Expect = e-152
Identities = 293/301 (97%), Gaps = 1/301 (0%)
Strand = Plus / Plus
Query: 1 agcaaaa-aaaatttttgaagacaggcttatccaaggcttccacagaggctctgactaaa 59
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaaaacaaaatttttggagacaggcttatccaaggcttccacagaggctctgactaaa 260
Query: 60 tatcaaaaaggaatgctagttctgtgttcttgtccaggggtgaacttgagaagttctggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcaaaaaggaatgctagttctgtgttcttgtccaggggtgaacttgagaagttctggt 320
Query: 120 ctgtggctggtatcaagagatcaaagtagttaaggtttctgtttctgggaacctaacttt 179
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtggctgggatcaagagatcaaagtagttaaggtttctgtttctgggaacctaacttt 380
Query: 180 tctctctgaagagactggagttattggttccaaggccattgagagctcagtctatagcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tctctctgaagagactggagttattggttccaaggccattgagagctcagtctgtagcac 440
Query: 240 acttgtattacctggtgttccttttatgtaaaattgcttgattatcttcctactgacttt 299
||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 441 acttgaaatacctggtgttccttttatgtaaaattgcttgattagcttcctactgaattt 500
Query: 300 a 300
|
Sbjct: 501 a 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 704
Length adjustment: 9
Effective length of query: 294
Effective length of database: 695
Effective search space: 204330
Effective search space used: 204330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_o05.g1 MSMg01no109_o05.g1 CHROMAT_FILE:
MSMg01no109_o05.g1 PHD_FILE: MSMg01no109_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:16 2005
(245 letters)
>mm_chr4_5166902_5167546
Length = 645
Score = 435 bits (225), Expect = e-126
Identities = 240/245 (97%)
Strand = Plus / Minus
Query: 1 aaataaaaaactcaaaatttcatgactatatctaagtatcatttcattaaatataaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaataaaaaactcaaaatttcatgactatatctaagtatcatttcattaaatataaacta 386
Query: 61 catttcctgtagccattttttctctgaatttattaaaaattaaaggcaataatctgcaaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttcctgtagccatttttgctctgaatttattaaaaattaaaggcaataatctgcaaa 326
Query: 121 aaccctgcctctttacatttgaaaatgtaaagagtatttgatatttagtatctgaaggat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaccctgcctctttacatttgaaaatgtaaagagtatttgatatttagtatctgaaggag 266
Query: 181 aatggcacaaggcacaatttattacatttacgtgttgaactggcacgtgtctgcccatat 240
||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 265 aatggcacaaggcacaatttattacgtttaagtgttgaactggcaggtgtctgcccatat 206
Query: 241 ttctt 245
|||||
Sbjct: 205 ttctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
