BAC Information

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BAC

Clone NameMSMg01-110A20
Chromosome4 (Build37)
Map Location 144,900,896 - 144,901,482
singlet/doubletsinglet
Overlap geneTnfrsf8
Upstream geneLOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b
Downstream geneLOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110A20.T7 (MSMg01no110_a20.b1)MSMg01-110A20.TJ (MSMg01no110_a20.g1)
ACCAG323077AG323078
length731717
length of high quality
(start - end)
416 (57 - 472)587 (88 - 674)
definitionCHROMAT_FILE: MSMg01no110_a20.b1 PHD_FILE: MSMg01no110_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:29 2005CHROMAT_FILE: MSMg01no110_a20.g1 PHD_FILE: MSMg01no110_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAAGCGNAGCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCGCACCCTTCACACACACACACACACACACACACA
CACACACACACACACACACACACGGAAAAAGAAATTAATCTTTTTTTAAA
ATGCTATTACCTATTTCTACTATCTTTTGGGGCAGTGGTTCTCAACCTTC
CTAACGCTATGACCTTTTAATACTCTTTCTCATGTTTTGGTGACCCAACA
ATAAAATTATTTCACTGCACTGGGCATGTTGGCACACACATTTAATCCCA
GCATTCAGAAGGCAGAGGCAGGCAGATCTTTAAGTTCAAGGCCAGCCTAG
TCTGTACAAAGTGAGCTACTCAGATAAACCCTGCCTCAAAAAAAAATTAT
TTTGTTGCTACCCCATAACTGTAACCCCCCCCCTGTTATAAGTTTAATGT
AAATATCTGATATGGGATACCCAAGAGGTCATACCCACAGGTTGTTAACT
GCTGCTTTGGAGTCTTGAACTCTATAAGTATTCTTTAGTAAATAGAGTAT
TGTCAAAGCTACGAGCAGAGCTCCTCAAGGTAACTGGATCATGCTGTCTG
CTCAGGAACCACGCTAAGAATTCTCAGGTGAATAGTGAACCTTGCGGTTT
GATCAGCTGAATGCGTTTGCCTACCTTTCACTAAGCCTCTGGTTTTTAGC
CCCAGTACCACACATATTCATATGTGTACCC
AAGCGCCCNNNNTCGATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCTTCAGAA
TTCCCCTGATATCTTCCCCGGGCATCCTGCCTTTGGCTCCAGTCTGATTT
TCCTCCTTCAGCTCTGGCTTAACATTTTAAGGTTCCCATAGGGGAATTCT
CATGAATGAGTCTTTGCAGCATGCAGCTCTGCTAATAGGCTGTCACTGAT
GAAGCATGCCCAGTCATCTTGCACAGTAGGGCTAACTGTGGCGGTCTTGG
TATTCAACAGAGGGCAAGAGAACTTTCTTGGATTCCTGTAGAAAAGTAAC
TTTCAGAACCATTCAAATCCTGACTAGAGGCAGAATTCCATGGGATACCC
CAGAAACAGAGGAGGAAACCAAAATGGCAAGAGAGGGGAAAAGGAGACTA
TAGCTTCTCTTAATTGAAGGCTGCCTTCCTCAATTGAGGTTCACAAGCAA
CAAGGGTTCCAAGGCCAAGGCAGGGCAGCTGCATTACTCAGCTCGAGAGC
AGTTCTGTTGAGACTAGGACAGCCCTTACTGGAACTTTCAGTGGTATCTA
CTCATATCTGACCAAAATACTTCTTGAGTAGGAGCGATTCATTTCTAGGT
CTGCACATACTGGCATCCGATGCATCTCAGGACAGAAGAAAAGGGGGGGG
GGGGGACCCTGAACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_a20.g1 MSMg01no110_a20.g1 CHROMAT_FILE:
MSMg01no110_a20.g1 PHD_FILE: MSMg01no110_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:30 2005
         (587 letters)



>mm_chr4_144900696_144901682
          Length = 987

 Score = 1112 bits (575), Expect = 0.0
 Identities = 584/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggcttcagaattcccctgatatcttccccgggcatcctgcctttggctccagtctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tgtggcttcagaattcccctgatatcttccccgggcatcctgcctttggctccagtctga 728

                                                                       
Query: 61  ttttcctccttcagctctggcttaacattttaaggttcccataggggaattctcatgaat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 727 ttttcctccttcagctctggcttaacattttaaggttcctataggggaattctcatgaat 668

                                                                       
Query: 121 gagtctttgcagcatgcagctctgctaataggctgtcactgatgaagcatgcccagtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gagtctttgcagcatgcagctctgctaataggctgtcactgatgaagcatgcccagtcat 608

                                                                       
Query: 181 cttgcacagtagggctaactgtggcggtcttggtattcaacagagggcaagagaactttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttgcacagtagggctaactgtggcggtcttggtattcaacagagggcaagagaactttc 548

                                                                       
Query: 241 ttggattcctgtagaaaagtaactttcagaaccattcaaatcctgactagaggcagaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttggattcctgtagaaaagtaactttcagaaccattcaaatcctgactagaggcagaatt 488

                                                                       
Query: 301 ccatgggataccccagaaacagaggaggaaaccaaaatggcaagagaggggaaaaggaga 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 487 ccatgggataccccagaaacagaggaggaaaccaaaatgggaagagaggggaaaaggaga 428

                                                                       
Query: 361 ctatagcttctcttaattgaaggctgccttcctcaattgaggttcacaagcaacaagggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctatagcttctcttaattgaaggctgccttcctcaattgaggttcacaagcaacaagggt 368

                                                                       
Query: 421 tccaaggccaaggcagggcagctgcattactcagctcgagagcagttctgttgagactag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tccaaggccaaggcagggcagctgcattactcagctcgagagcagttctgttgagactag 308

                                                                       
Query: 481 gacagcccttactggaactttcagtggtatctactcatatctgaccaaaatacttcttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gacagcccttactggaactttcagtggtatctactcatatctgaccaaaatacttcttga 248

                                                          
Query: 541 gtaggagcgattcatttctaggtctgcacatactggcatccgatgca 587
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtaggagtgattcatttctaggtctgcacatactggcatccgatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)