BAC Information

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BAC

Clone NameMSMg01-111L08
Chromosome4 (Build37)
Map Location 80,712,172 - 80,712,499
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111L08.T7 (MSMg01no111_l08.b1)MSMg01-111L08.TJ (MSMg01no111_l08.g1)
ACCAG324311AG324312
length1,1591,164
length of high quality
(start - end)
630 (74 - 703)329 (122 - 450)
definitionCHROMAT_FILE: MSMg01no111_l08.b1 PHD_FILE: MSMg01no111_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:22 2005CHROMAT_FILE: MSMg01no111_l08.g1 PHD_FILE: MSMg01no111_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACACTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
TTGTTTAGCTTTGCCTTTATTTTTGATAGGGATATTTGATTCTCTGGAGT
CTAACGTCTTGAGTTCTTTGGATATATTGGATATCAGCCCTCTATCAGTT
GCAGGATTGGTAAAGATCTTTCCCTAATCTGTTGGTTTCCATTTTGTCCT
ATTGATAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTGTGAGGTCCC
ATCTGTCAATTCTTGATCTCACTGAGAAGTGGATATTAGACCAGAAGCAC
GGAATAACCAAGATTCAAATCACAGACCACATGAAGCTCAAGAAGAAGGA
AGACCAAAGTGTGGATACTTCAGTCCTTCTTAGAAGGTGTATCAAAATGC
CCATGGGAGGGGATACAAAGATGAGGTATGGAGCAGAGACTAAGGGGAGG
GGGGCGTTTAGAGACTACCCCACATGGGGATCCATCCCATGTATAGTTAC
CAAACCCAGACACTATTGCAAATGCCAACAAGTGCTTGCTGACAGGAGCT
TGATGTGGCTGTTTCCTGAGGGGCTCTGCCAGTGCCTGACAAATGCAGAG
GTAGATGCTCACTGCCAGTCAATGGACTGAGTAGGGGATCCCCAATGGAG
GAGCTAGAAAAGAACCCAAGGAGCTGAGGGAGTTTGAAGCAATACGGACG
AACCAGTATCCCCAGAGCTCCCAGGGACTAAACCACCAACCAAAAAGTAT
ACATGGAGGGACCCATGGCTCCATCAGCGTATGTACCAGAGGATGGCCTT
GTCAGTCATCAATGAGAGGAAAGCCCTTGGTCCTGAGACAGCTTGCTGCC
TTAGTGTAGGGGAATGCCAGGACAGGGAAGCAGGAGTGGTTGTGTTGTTG
AGCAGGCGGAGGGGGAAAGTGTGTGTTAACTTCTCCTTCCTATTTTCTTC
ATTCTTTTTTTTTTTCTCTCCTTTTATTTCTATTTCTTTTTCTTTTTTCC
TTCTCTTCTTTTTCTTTTTCTTCTTACTCTTTTTTNTTCTTCTTTCTNTT
CTATCCTTCTCGTCCTTTCTTCCTTTTTTTATTTTTTTTGCCTTTCTTTT
TTCTTTTCTCTCTTATTTTATTTACTCATCTCTTCTTTTTTCTCTCTTTT
CTCTCTTCC
NNNTTGGCGATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAATTAAGTTCCCTGGNAGATGGNATGGCAGCA
TGCATATCCTTTCAGCCTCCCGAAGTGGACAGAGGATCCCCAGAGCAAGC
TGCCTAGTGAGAATAGCCACAACAGCAGCTCAACTCTCAGTTGGAATGAA
AGACTTAGAGAATAAGATGGCAGGACAATGAGAAAGATTCTGCGTATCAA
CTTTGGGTCTGTAGATGCACAACACACAATATGACCACATACACACAAAA
TATTCATAACACACATACACACACATGCATATGGTCACCACAAACACAGG
AAAGTGGAAAATTTTAAAGAAACTATAAGCATGTGCATATATAGTGTTTT
TCCATCTTTATCTCTTGATACTTCAAAACAAAATCTTTAGAACTGAATAT
TTTTTTACACAATAAGGGATTTCTAAAATTTTCCTCCTGATTTGATAATT
TCTTTACCATAATCCACTACATTGTAATTTGTATATTTGTCTGTATGTTT
AATATTGTTGAGTCACAATGAACATTATAAAGGTTGGTGTGACTATTGTT
TCTTTCTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAAT
GCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACC
CACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGT
TTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT
TTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTC
ATAATGTTGTTCCCCCTATAGGGTGCAGATCCCTTTAGCTCCCTGGCTAC
TTTCTCCAGTTCCTCCCCTTGGGAGCCCCATGAACCCTCCATTACCTGAC
TGTGAGCATCCCCTTTCGGTGTTTGCTAGGCCCCCGGCATAATCCCCACA
AAAAACAGCTTACATTCTGGGCCCCTTTCAAAAAAACCTTGCCTAGTGTA
ATGCCAGGGGGGCCCGCCGTTTGGGATGCCTGATTATGTGGGGGGGATCC
CCGGAAAATGGGCAACCCCCTCACTGGGCCCCCCTCCTTTTATTCTAAGT
CTCCATAATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_l08.g1 MSMg01no111_l08.g1 CHROMAT_FILE:
MSMg01no111_l08.g1 PHD_FILE: MSMg01no111_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:22 2005
         (329 letters)



>mm_chr4_80711972_80712700
          Length = 729

 Score =  611 bits (316), Expect = e-179
 Identities = 325/328 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagtggacagaggatccccagagcaagctgcctagtgagaatagccacaacagcagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagtggacagaggatccccagagcaagctgcctagtgagaatagccacaacagcagctc 260

                                                                       
Query: 61  aactctcagttggaatgaaagacttagagaataagatggcaggacaatgagaaagattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aactctcagttggaatgaaagacttagagaataagatggcaggacaatgagaatgattct 320

                                                                       
Query: 121 gcgtatcaactttgggtctgtagatgcacaacacacaatatgaccacatacacacaaaat 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gcgtatcaactttgggtctgtagatgcacaacacacaatatgcccacatacacacaaaat 380

                                                                       
Query: 181 attcataacacacatacacacacatgcatatggtcaccacaaacacaggaaagtggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcataacacacatacacacacatgcatatggtcaccacaaacacaggaaagtggaaaa 440

                                                                       
Query: 241 ttttaaagaaactataagcatgtgcatatatagtgtttttccatctttatctcttgatac 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 ttttaaagaaactataagcatgtgcatatatagtgtatttccatctttatctcttgatac 500

                                       
Query: 301 ttcaaaacaaaatctttagaactgaata 328
           ||||||||||||||||||||||||||||
Sbjct: 501 ttcaaaacaaaatctttagaactgaata 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)