BAC Information

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BAC

Clone NameMSMg01-112F12
Chromosome4 (Build37)
Map Location 83,117,072 - 83,117,377
singlet/doubletsinglet
Overlap genePsip1
Upstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3
Downstream geneLOC100040611, 4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112F12.T7 (MSMg01no112_f12.b1)MSMg01-112F12.TJ (MSMg01no112_f12.g1)
ACCAG324779AG324780
length724725
length of high quality
(start - end)
312 (46 - 357)451 (77 - 527)
definitionCHROMAT_FILE: MSMg01no112_f12.b1 PHD_FILE: MSMg01no112_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:28 2005CHROMAT_FILE: MSMg01no112_f12.g1 PHD_FILE: MSMg01no112_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTTCTGTACTCCAAGCCTAGGGTGTGGAACTGCTAATGTCTTG
ACTATGAACCCACTTTGGAAATCCTAGGACATTTAAGCACTTAAACTAAC
TGCTTAGGAAAAGACTCCTTTCTACAGATATTCACTGACTATCCACCTGG
TTGCCCAGGGGCTCTGGTGTGATGGAAATGTTCACGTATACAGTAAGAAT
AGTCATGCCTGGGAATAATCCATCAACACTTGGGGATTAGCAGTGAGAGG
GGTTTCTTGACAGTCTCCTCCTGGTGAAGGTACTATAAATGTTGAAGTGA
CATTAAACGATTTCACACATTATGTAAATGGCTGATAAAGCAGCATCAGA
TTTTGAGACATTTGACCCCCATTTGAAAGAAGTCTGTAGGTAAAATATAT
TAAAAACAAGAAATCTTTGCATTCTATGGCGAAACTTTCTATGCATGGAA
TAAATCAGTCGACGGGACAGATTTCATTTTGTTTCCTTTTAATACATTGT
CCCTCTTATTCCCACGTTTAGTAACTACCATGCTGATAATTCGCACCCCT
CAATACTACCGTTATGTATCCCCCTCGGCTCACTGAAGTGTTAGATGATT
CGTTAGCATCTCGATGTACGTGGTTTCTTTTGTGCGCATTCCCACTCCAC
TTTTTTTTCTTTCTCCCCTCTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAAAGATGAATGAGTCTAAAA
GGGAAGATATTGACTGGCCTACACCTGTGATGCTTATTCTAGGTCTGCCA
CAATGTCTGTGAGCACTTCTGGGTCTGGCAGCAACATCTTCAATATCTGA
TCCCAAAAGGTTAGTGTGCTAGTTGGCTTTCTATTTCTGTGAGAAACACC
ATGACCGAAAGCAACTTGTGGAGGAGAAAGTTTATTTTAGTTTAAAGCTT
ACAGTCCAGTACAAAGGGAAGTCAGAGCAGGAACTCAAGACAGGAACCTG
GAGGCAGGAACTGAGTCACAGACCTTGGAGGAATGCTACTTACTGACTTA
CTCCCCATGGTTTGCTCACCCTTCTTTTTATACAACCCAAGAGCACTTAC
ACAGAGATCGCACCACCCCACAGTAAGCTGGGCTCTCCTAAATCAATCAT
TTATTAAAATATCCCACAGGCTTGTCAACAGACCAATCTGATGGGGTCAT
TTTTCTCAACGAGGTTCCTTTTACTGGCTAACTCTAGTTTGTGTCAAGTT
GACAAAACACTAACCAGCCCAGCTAGGTGTTAGGAATCCTGGCTCAGAGT
TAAGGCTTGGAATATCTAGTCACCACCCATTGATTTAACATCAGTTCAAT
TCTCAATGTCCCCTAATGGCCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_f12.b1 MSMg01no112_f12.b1 CHROMAT_FILE:
MSMg01no112_f12.b1 PHD_FILE: MSMg01no112_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:28 2005
         (312 letters)



>mm_chr4_83116869_83117577
          Length = 709

 Score =  547 bits (283), Expect = e-160
 Identities = 302/309 (97%), Gaps = 3/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatttctgtactccaagcctagggtgtggaactgctaatgtcttgactatgaa 63
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaattcaatttctgtattcaaagcctagggtgtggaactgctaatgtcttgactatgaa 450

                                                                       
Query: 64  cccactttggaaatcctaggacatttaagcacttaaactaactgcttaggaaaagactcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cccactttggaaatcctaggacatttaagcacttaaactaactgcttaggaaaagactcc 390

                                                                       
Query: 124 tttctacagatattcactgactatccacctggttgcccaggggctctggtgtgatggaaa 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 389 tttctacagatattcactgactatccacctggttgcccaggggctctggtgtgacggaaa 330

                                                                       
Query: 184 tgttcacgtatacagtaagaatagtcatgcctgggaataatccatcaacacttggggatt 243
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgttcacgta--cagtaagaatagtcatgcctgggaataatccatcaacacttggggatt 272

                                                                       
Query: 244 agcagtgagaggggtttcttgacagtctcctcctggtgaaggtactataaatgttgaagt 303
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 271 agcagtgag-ggggtttcttgacagtctcctcctggtgagggtactataaatgttgaagt 213

                    
Query: 304 gacattaaa 312
           |||||||||
Sbjct: 212 gacattaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 709
Length adjustment: 9
Effective length of query: 303
Effective length of database: 700
Effective search space:   212100
Effective search space used:   212100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)