BAC Information

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BAC

Clone NameMSMg01-112I18
Chromosome4 (Build37)
Map Location 6,566,879 - 6,567,407
singlet/doubletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneTox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112I18.T7 (MSMg01no112_i18.b1)MSMg01-112I18.TJ (MSMg01no112_i18.g1)
ACCAG324930AG324931
length716699
length of high quality
(start - end)
533 (46 - 578)375 (59 - 433)
definitionCHROMAT_FILE: MSMg01no112_i18.b1 PHD_FILE: MSMg01no112_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:44 2005CHROMAT_FILE: MSMg01no112_i18.g1 PHD_FILE: MSMg01no112_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCAACAATATTACTTACTAACTCGCTTATTGCTTCCTGAGCACTGAAC
TTTGTCTTAGCTGTCTTATAATTAACAACATTTGAGTGAGTGTCATAAGC
CTATGTGAGAGGTATTTTTATTGACCCACTTTACAGAAAGGGAAAAAATC
CTGAGGCCCAAAGCAGAACAGTCTCAAGATTACACAGTCTCAGGATTTTA
AGATTTCAGCTACTCACACAAGCTCTTCAGTTCAATAAAAAGAAAAGGAA
CTAGTGAATTGTCATGGGAAGCTCAAAAGACATGGCGACTTAAAGACAGA
AGCTTGTCAGCTTTCTGAGAGTAAGGAACATTTCTGCCTCTTCAACAGGT
TTCTACAGACACTCAAAGAGCATTAGAAACCAGCTGTTCAGTAAATGTCT
GCTGAATGAATAAATGAGGATCTTGGAGGAGTGTTGTTTTTCTTCCTAGG
GAGACATGAGCAAACATCTACTCATCCCAAGACGGGGAACCAATTATGGA
CAAAAGTAACAATTCCACCAAAGTCCACTTTGGCACAGGAGTGTAGTGAG
GCATTTCTTAGAGCAGAGTAGATGACATCTCAGAATCATTGCTGAAAAGA
GGACTCACAAAAGCTGCGTTCTTGGAACCCTCTGTGAAGTTTTCAGGCAG
ATGGAAAAGAAAAGCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTACCTGTTTAGCAGTGTTCTCCTGTATTTCTTTAAGTGAGTT
ATTAATGCCCTTTTAAAAATCCTCTACCAGCATCATGAGATATGATTTTA
AATCCAAATCTTGCTTTTTGGGTGTGTTGGGGTATCCAGGACTTGCTGTG
GTGGGAGTAATGGGTTCTGATGATGCCAAGTGGTTTTGGTTTCTATTAGT
ACGATTGTTAGGTTTGCCTTTTGCCATCTGGCATTCTCTGGAGTTAGATG
TTCTAATTGTCTCTGGCTGGAACTTGTTTCTCCTGTGATTTCTGTTAACT
TCTGCCAGCACTCCTGGGAGTTCAACTCTCCCCTGAGTCCCAGTGGTCAC
ACTACTCTCTGCAGGCAAGCTCTCCTTTGGTGAGGAAGGTGCCCATAGGT
CTGGGTCTCATCTCTGACTCCTGGCTAAGGATAAAGGTCCAAATGGACCC
TGTCCAATACCGCTCTGCTGCTTCTGTGGCCTGTGCACTCTCCTACGCAC
CCTGGTTTGAGAGACCCTTAATATTAGATGATGCTCTGACCTGAGTCTTG
TGTCTCTAGCTTTATCTGGAGGCCGACTCTCCCCTGCCGGTGAATGCGTG
CTGTTCCTACCCCATTATCCACCATCCAGTATTACTACCTTATCCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_i18.b1 MSMg01no112_i18.b1 CHROMAT_FILE:
MSMg01no112_i18.b1 PHD_FILE: MSMg01no112_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:44 2005
         (533 letters)



>mm_chr4_6566710_6567642
          Length = 933

 Score =  961 bits (497), Expect = 0.0
 Identities = 521/529 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaacaatattacttactaactcgcttattgcttcctgagcactgaactttgtctt 63
           ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattcaacaataatagttactagctcgcttattgcttcctgagcactgaactttgtctt 639

                                                                       
Query: 64  agctgtcttataattaacaacatttgagtgagtgtcataagcctatgtgagaggtatttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agctgtcttataattaacaacatttgagtgagtgtcataagcctatgtgagaggtatttt 579

                                                                       
Query: 124 tattgacccactttacagaaagggaaaaaatcctgaggcccaaagcagaacagtctcaag 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tattaacccactttacagaaagggaaaaaatcctgaggcccaaagcagaacagtctcaag 519

                                                                       
Query: 184 attacacagtctcaggattttaagatttcagctactcacacaagctcttcagttcaataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 attacacagtctcaggattttaagatttcagctactcacacaagctcttcagttcaataa 459

                                                                       
Query: 244 aaagaaaaggaactagtgaattgtcatgggaagctcaaaagacatggcgacttaaagaca 303
           |||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 458 aaagaaaaggaactagtgaattgtcatgggaagctcaagagacatggtgacgtaaagaca 399

                                                                       
Query: 304 gaagcttgtcagctttctgagagtaaggaacatttctgcctcttcaacaggtttctacag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaagcttgtcagctttctgagagtaaggaacatttctgcctcttcaacaggtttctacag 339

                                                                       
Query: 364 acactcaaagagcattagaaaccagctgttcagtaaatgtctgctgaatgaataaatgag 423
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 338 acactcaaagagcattagaaacaagctgttcagtaaatgtctgctgaatgaataaatgag 279

                                                                       
Query: 424 gatcttggaggagtgttgtttttcttcctagggagacatgagcaaacatctactcatccc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gatcttggaggagtgttgtttttcttcctagggagacatgagcaaacatctactcatccc 219

                                                            
Query: 484 aagacggggaaccaattatggacaaaagtaacaattccaccaaagtcca 532
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aagacggggaaccaattatggacaaaagtaacaattccaccaaagtcca 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)