Query= MSMg01no113_d13.b1 MSMg01no113_d13.b1 CHROMAT_FILE:
MSMg01no113_d13.b1 PHD_FILE: MSMg01no113_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:35 2005
(653 letters)
>mm_chr4_35388261_35389313
Length = 1053
Score = 804 bits (416), Expect = 0.0
Identities = 540/650 (83%), Gaps = 105/650 (16%)
Strand = Plus / Plus
Query: 4 ggaattcagtagcactcgataaatacaacaatacacaggtactcttcatgggtgatggag 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtagcactagataaatacaacaatacacaggtactcttcatgggtgatggag 263
Query: 64 ctcctgggaagtgctgagccccatgtttcaaaactaccggcactgatggcattataggct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcctgggaagtgctgagccccatgtttcaaaactaccggcactgatggcattataggct 323
Query: 124 tttatgagacaatttagtgatgcacacgattcactaaactagttccagaacacagtagtg 183
|||||||||||||||||||
Sbjct: 324 tttatgagacaatttagtg----------------------------------------- 342
Query: 184 accttccttgttgcttagaccaactctttgacaaaagataatttaagaaagggtttactc 243
|
Sbjct: 343 -----------------------------------------------------------c 343
Query: 244 tggctcctcgttccagggtagtcagctgtgacagggaagtcttggaggcaagagcttggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tggctcctcgttccagggtagtcagctgtgacagggaagtcttggaggcaagagcttggg 403
Query: 304 gcagttggacacagtgttccatgctcagtgagtagagacctagcaatgctagtgtttaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gcagttggacacagtgttccatgctcagtgagtagagacctagcaatgctagtgtttaga 463
Query: 364 tagatgtctctttaactcagcccagcatattagccaatggcatggtcaagcccagggttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tagatgtctctttaactcagcccagcatattagccaatggcatggtcaagcccagggttg 523
Query: 424 aggtaggttttcccatcctactgaacttacttcagatgcccctcacaggcatgcccagag 483
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 524 aggtaggttttcccatcctactgaacttacttcagatgcctctcacaggcatgcccagag 583
Query: 484 acttgtgtcctggatggatctagatcatgtcaagcggccagtcaatattcctaatcatac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 acttgtgtcctggatggatctagatcatgtcaagcggccagtcaatattcctaatcatac 643
Query: 544 agagggctaaggaaggctttactctcctgtgccgtgctgtgggaacattttcaagtcaga 603
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 644 agagggctaaggaaggctttactctcctgtgccatgctgtgggaacattttcaagtcaga 703
Query: 604 aaacttatacacgcttaatgactacatgtaagatctcacggacctctata 653
||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct: 704 aaacttaaacacgctt-----ctacatgtaagatctcacagacctctata 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_d13.g1 MSMg01no113_d13.g1 CHROMAT_FILE:
MSMg01no113_d13.g1 PHD_FILE: MSMg01no113_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:35 2005
(557 letters)
>mm_chr4_35495264_35496220
Length = 957
Score = 745 bits (385), Expect = 0.0
Identities = 400/405 (98%)
Strand = Plus / Minus
Query: 1 agtcactgaaacaatagatagaatgggaattttaaaattcttctatttattcttctgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtcactgaaacaatagatagaatgggaattttaaaattcttctatttattcttctgtca 346
Query: 61 tatatcacatctcaactacagtttctcctttctcttctcctccaagaaccccccccccat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 345 tatatcacatctcaactacagtttctcctttctcttctcctccaagaaccccacccccaa 286
Query: 121 atttttaaatactggacttaatgtaattgtactgagaatattagaagaggagactagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atttttaaatactggacttaatgtaattgtactgagaatattagaagaggagactagttg 226
Query: 181 atgtcttaggccatctttgtctacaaacactattcagctattaagaaagaatattatgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atgtcttaggccatctttgtctacaaacactattcagctattaagaaagaatattatgaa 166
Query: 241 tttctcggttaaagagagggaatgaaaacaatcacctgagtgaggtaacccagacctcaa 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tttcttgggtaaagagagggaatgaaaacaatcacctgagtgaggtaacccagacctcaa 106
Query: 301 acgacaaccattgcatgttctccctcctttgggatatcagctttgactcttggtatgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 acgacaaccattgcatgttctccctcctttgggatatcagctttgactcttggtatgtat 46
Query: 361 ttcatttggaatagccatagaggttaagaaactagtaaggcacca 405
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 45 ttcatttggaatagccatagaggttaagaaactagtaaggtacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
