BAC Information

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BAC

Clone NameMSMg01-113D22
Chromosome4 (Build37)
Map Location 12,353,575 - 12,353,862
singlet/doubletsinglet
Overlap genenone
Upstream gene1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113D22.T7 (MSMg01no113_d22.b1)MSMg01-113D22.TJ (MSMg01no113_d22.g1)
ACCAG325441AG325442
length700695
length of high quality
(start - end)
270 (138 - 407)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no113_d22.b1 PHD_FILE: MSMg01no113_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:37 2005CHROMAT_FILE: MSMg01no113_d22.g1 PHD_FILE: MSMg01no113_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCC
GCGGAATTCTACTAATTCCCTAGCCCACAGAAACTGGGCAGAAGAAGTTG
CTCTTGTTCAGTGTTTATGTTTAACTAGTTTAGTAGAGCTGAGTTACATG
CCACTATGTAACTACATACTCACCTGGATAGCATGAGTTAGCTGCATGGC
CTAAGAGGCAGTCTCGCATACTGATTACGAGTAGAATTAGTGGAGTTAGA
CAGATCTGAGTTTGAACCCTACATAAGCAATTTCCCAAGTTATGTTTCCT
TTCTAAATCTCAGTTTCCTCCCCTGAAGAACACATAATGAAATTTCTTGT
CTGTCACCTCGCTCAGGCTCACACATCATAGAAATACATAACACGGGATC
CATGTGTATATCCTATATCCCGAGTGACAGAATAGATGTACACCTGTTTG
TTCTGAGCGTGCGTGTGTTGCAGGTTGTTACGTGTAGCACACGCTTGACC
TACTTTTTTAATTCCCACCCCCCTGTTTTATCTCCCACTATGTTTGTTTG
TTCGTCCATAAATGCTTTTCTCGCGGACTAAAATGTTCGGTTTATATCAA
CGCCCCCCTTGATTTCGTTTGGGCGCCACCTCACTGATGTTTTCCCTCGT
CAAACCCCCCAAATCCTTCGTTCCTACGTCAATTTGCATACCTTTTTCTT

NCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAGTGGGTAAGACTCGACCTGAAAG
TCCAGGTGTCCTGGACTATGCTAAAGGAGATGAATCCAGGAGCTCAGAAA
TGGAGGAATCCTTTCTGCTTGCAGCACTACGCTGGGAGCTGCACCTCTTC
TCTGCCATGATCAACTGAAACCACAGGGCACTGCAAATCTATTCTGTACA
TTGTTTATACCAGGCATTTGCTATAGCAATGGAAATGACAACTAAAATGG
GGGCGGAGGGGGGAGGATATATCATAACAGTGGAGACATTGCTGTTACCA
CCTGACCACGTGGTTATTGATAAGGTTTGTTTTCTATGTTAGTTCCAAAA
TTCAAAGGTAGGGGACAATCTTGAAATTAAGCAGCACCACGTAGGACAAT
TCTAGAACACAGCAGATAGAATCCGCTGGTATATAAGGCCCCTCCCTTTT
TTCTGCATTCTATTACACGTAAGGAAATGCACATACCAACTCCACTTATG
CAGACCCTTTGCAAACCCAACTGTCATTCAGGGTTACAACAATCCTTTCT
CTGCTGTAGGTCTGGGGTTCGATAACCGCCCTGACAGATCTTCCCTCATT
AGCGACGCGCCGTTTATAATCGACCCCAACCTATATGGCCACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_d22.g1 MSMg01no113_d22.g1 CHROMAT_FILE:
MSMg01no113_d22.g1 PHD_FILE: MSMg01no113_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:37 2005
         (289 letters)



>mm_chr4_12353375_12354062
          Length = 688

 Score =  489 bits (253), Expect = e-143
 Identities = 280/289 (96%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagtgggtaagactcgacctgaaagtccaggtgtcctggactatgctaaaggagatga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagtgggtaagact-gacctgaaagtccaggtgtcctggactatgctaaaggagatga 259

                                                                       
Query: 61  atccaggagctcagaaatggaggaatcctttctgcttgcagcactacgctgggagctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atccaggagctcagaaatggaggaatcctttctgcttgcagcactacgctgggagctgca 319

                                                                       
Query: 121 cctcttctctgccatgatcaactgaaaccacagggcactgcaaatctattctgtacattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 cctcttctctgccatgatcaactgaaaccacagggcactgcaaatctgttctgtacattg 379

                                                                       
Query: 181 tttataccaggcatttgctatagcaatggaaatgacaactaaaatgggggcggagggggg 240
           ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 380 tttatgccaggcatttgctatagcaatggaaattacaactaaaatgggggtggagggggg 439

                                                            
Query: 241 aggatatatcataacagtggagacattgctgttaccacctgaccacgtg 289
           |||| ||| || ||||||||||||||||||||||||||| |||||||||
Sbjct: 440 aggagataccagaacagtggagacattgctgttaccacccgaccacgtg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)