Query= MSMg01no113_p09.b1 MSMg01no113_p09.b1 CHROMAT_FILE:
MSMg01no113_p09.b1 PHD_FILE: MSMg01no113_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:33 2005
(578 letters)
>mm_chr4_44096920_44097894
Length = 975
Score = 1009 bits (522), Expect = 0.0
Identities = 560/574 (97%), Gaps = 3/574 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcctgtgtccctggacattagtttttaagtaggaggacagctggcacctgagg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctgtgtgcctggacattagtttttaagtaggaggacagctggcacctgagg 264
Query: 65 gccacttccctgttctcgatagatgactgaactgggtgattttcttttcaataaaaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccacttccctgttctcgatagatgactgaactgggtgattttcttttcaataaaaaaaa 324
Query: 125 gtttcttctgagtctctgaatgctcaccggacagattctacaacgagagtctccactgcc 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttct---gagtctctgaatgctcaccggacagattctacaacgagagtctccactgcc 381
Query: 185 tttctgttttcacacaggtaatttcagaacgtctgctgatacattcctctgaacaaagca 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 382 tttctgttttcacacaggtaatttcagaacgtctgctgatacagtcctctgaacaaagca 441
Query: 245 acgaagacgggaagacttagtgggagtccttatcagccacaaacttctccgtgtttagaa 304
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 442 acgaagacgggaagacttagtgggagtccttagcaaccacaaacttctccgtgtttagaa 501
Query: 305 acctcagcttcattagactgcaggaaaatcaaatcacattcatctaagctgttaggacag 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 502 acctcagcttcattagactgcaggaaaatcaaatcacactcatctaagctgttaggacag 561
Query: 365 aaaatacgcctccgctgacaaagaatgcacttttatgtttccagtgtccggggaccccca 424
|||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 562 aaaatatgcttccgctgacaaagaatgcacttttatgttttcagtgtccggggaccccca 621
Query: 425 atgggatcccagctaacgatctgcttgttataaatacaaccctctgtttcagtggtgagg 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagggatcccagctaacgatctgcttgttataaatacaaccctctgtttcagtggtgagg 681
Query: 485 gatcatctccacggtctcctactgcgcgtgctcagccttaagccccactggaggcgattt 544
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 682 gatcatctccacggtctcctactgcgcatgctcagccttatgccccactggaggcgattt 741
Query: 545 ataactaaatgtaagtgccttgctgggtgcagta 578
||||||||||||||||||||||||||||||||||
Sbjct: 742 ataactaaatgtaagtgccttgctgggtgcagta 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 975
Length adjustment: 10
Effective length of query: 568
Effective length of database: 965
Effective search space: 548120
Effective search space used: 548120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_p09.g1 MSMg01no113_p09.g1 CHROMAT_FILE:
MSMg01no113_p09.g1 PHD_FILE: MSMg01no113_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:33 2005
(525 letters)
>mm_chr4_44260144_44261068
Length = 925
Score = 978 bits (506), Expect = 0.0
Identities = 509/510 (99%)
Strand = Plus / Minus
Query: 16 tagtaactagttacttagccataagcaaaggaatgcgaaggactgccagcacaccatggg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tagtaactagttacttagccataagcaaaggaatgcgaaggactgccagcacaccatggg 866
Query: 76 aattggtaaaagcaaagatgaatcccactataggtttcagagattttggacttctggacc 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aattggtaaaagcaaagatgaatcccactataggtttcagagattttggacttctggacc 806
Query: 136 ttaggacttaagcaatccatttcagttgttttaagcacccagtttgtggtatttgttatg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttaggacttaagcaatccatttcagttgttttaagcacccagtttgtggtatttgttatg 746
Query: 196 acagccctagaaacaaacaccaaggttcaaccattaaacccaggcctacagatcttaccc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acagccctagaaacaaacaccaaggttcaaccattaaacccaggcctacagatcttaccc 686
Query: 256 caagatacacaagaggccttctttctctgtcccatttctatttctttaataggttgctgg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caagatacacaagaggccttctttctctgtcccatttctatttctttaataggttgctgg 626
Query: 316 tatccttggccatttgcttgctcaacacacacacaatcacacccacgacattcccccatc 375
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 625 tatccttggccatttgcttgctcaacacacagacaatcacacccacgacattcccccatc 566
Query: 376 cccctcatgacaggcagcacacccgacagtctgtttatttcccaacatgctctgctcagg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccctcatgacaggcagcacacccgacagtctgtttatttcccaacatgctctgctcagg 506
Query: 436 gccagtcaggtcccctgccccctgcctcttcctggctctgggccagcccatctcctctgg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccagtcaggtcccctgccccctgcctcttcctggctctgggccagcccatctcctctgg 446
Query: 496 ggagacagtagattgaagcccccttctggg 525
||||||||||||||||||||||||||||||
Sbjct: 445 ggagacagtagattgaagcccccttctggg 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
