ATTATTGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTCCTGACGAAACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCC
TCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGTAACACATTCAC
AAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAA
ACCTAGGATACCCCAGATATAAGATATAATTTGC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAAGCTACACCATACATTCTCACCA
GCATGGCTGCCCAAACATGACCTGAATAAGGACAGCCACAATAGACATGC
TAAAGTGAATAGGAGAAAGCCCATATGGCCTCAGCCCTGTACAAAGAACT
ATAAGCAACTGATGAATGCTGAGAGTGGGAGAATGAATCTTCCCTAGGGA
AAATATTAACTAATTTTTAAATTTAATACCAAATGGTCAGCCCTAAAAGC
AAATACAGTCAAGTAACATTATACAGGGAAGGTTATATTTATGATTTTAG
AAACACACACACACACATATGTAGCAACAATGAACAAAAAATATATCATA
AATTTGAAAGAGAGAAGGGGGTTACATAGAAGGGTTGGAGGGGGCAAAGG
GAAGGGGAAATGATGTAATTATATTATGATCTCATAAAAAGCACAATGCA
ATTTCTGGTGGCTCCTATGAAGTTTGGAGAAAGGAAGGACTTGAGTTTCT
AACTTTGAGTCTCACATACATGATTGGAAAGTCTATACATTGGCCTTGAA
TGAAAGCCCTAACTCTTGAAGCTATAGAGTTGACATCTTTGAAAATAAAA
CTCCCAATTTCATAAGTGTTTGAATTTGAACCTTAAATGTACAACCAACT
ATAGTTACCTTTGTAATGAATAGTCTCN

Query= MSMg01no114_b12.g1 MSMg01no114_b12.g1 CHROMAT_FILE:
MSMg01no114_b12.g1 PHD_FILE: MSMg01no114_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:42 2005
         (531 letters)



>mm_chr4_89259579_89260509
          Length = 931

 Score = 1000 bits (517), Expect = 0.0
 Identities = 527/531 (99%), Gaps = 2/531 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaagctacaccatacattctcaccagcatggctgcccaaacatgacctgaataaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tagaagctacaccatacattctcaccagcatggctgcccaaacatgacctgaataaggac 262

                                                                       
Query: 61  agccacaatagacatgctaaagtgaataggagaaagcccatatggcctcagccctgtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agccacaatagacatgctaaagtgaataggagaaagcccatatggcctcagccctgtaca 322

                                                                       
Query: 121 aagaactataagcaactgatgaatgctgagagtgggagaatgaatcttccctagggaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagaactataagcaactgatgaatgctgagagtgggagaatgaatcttccctagggaaaa 382

                                                                       
Query: 181 tattaactaatttttaaatttaataccaaatggtcagccctaaaagcaaatacagtcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tattaactaatttttaaatttaataccaaatggtcagccctaaaagcaaatacagtcaag 442

                                                                       
Query: 241 taacattatacagggaaggttatatttatgattttagaaacacacacacacacatatgta 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 443 taacattatacagagaaggttatatttatgattttagaaacacacacacaca--tatgta 500

                                                                       
Query: 301 gcaacaatgaacaaaaaatatatcataaatttgaaagagagaagggggttacatagaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaacaatgaacaaaaaatatatcataaatttgaaagagagaagggggttacatagaagg 560

                                                                       
Query: 361 gttggagggggcaaagggaaggggaaatgatgtaattatattatgatctcataaaaagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttggagggggcaaagggaaggggaaatgatgtaattatattatgatctcataaaaagca 620

                                                                       
Query: 421 caatgcaatttctggtggctcctatgaagtttggagaaaggaaggacttgagtttctaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatgcaatttctggtggctcctatgaagtttggagaaaggaaggacttgagtttctaac 680

                                                              
Query: 481 tttgagtctcacatacatgattggaaagtctatacattggccttgaatgaa 531
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tttgagtctcacatacatgattggaaagtctatacattggtcttgaatgaa 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)