NAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTCTCAGAATGACCTTCACTCATTTCAGTTCTAAATGTTG
AAGGAAGTAGGTGATGAATTAGATCTTCTGCCTCCCTCAGGCTATGGTAC
AGCTGTGACTGCCGATGAAGTTACTGATTCTAATACCACGTTGTCTCTTA
GCACACTGATATTTTGATGTGTTTCTGACAATGACCACACACTGGGGTGC
CATTTAGAGGATCTCTGAAAACTTCAATCTATTCAAATTGCAAAATCAGT
TTCACTGAACATGTGCAGCTTTGTCCTTTGAAAGCCACATTCTTGGCAAG
TGAGCATGATTTCCAGAGAAAACTTTCTCTCTTGAACATGGTGGCATTAC
ATATTCTCTTCCTCTTTAAAACACAAACAGGTAATTTTAGGACAGCACTG
ATAGATGTTTCTGTCTTCCTAATTGGAACTCCTTGTTCATCTCATCCAAT
CTGTTTTCCCATCAATGAAAACAATATCTAATTACAAAGCTAAATATCAG
TGCCTCTCCTAGAGAAAACACAAAACATAGTGATATTTAACAAAACCTCC
CTCAGAATCCTACATATACGGATTTTCAGGAAAAATCTGACAGGAATACC
CCTTATTGTCTGGGTTACAGTACCCCAAATTATGTCTTTAAAG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTCCTTGACCAAGGTATCATTGAGA
AGAGTGTTGTTCAGTTTCCACATGAATGCTGGCTTTCTATTATTTATGTT
GTTATTGAAGATCAGCCTTACTCCATGGTGATCTGATACGATGCATGGGA
CAATTTCAATATTTTTGTATCTCTTGAGTCCTGTTTTGTGACCAATTATA
TGGTCAATTTTGGGGAAGGTATCATGAGGTGCTGAGAAAAAGGTATATCC
TTTTATTTTAGCATAAAATGTTCTCTAGATATTTGTTAAATCCATTTGTT
TCATAACTTCTGTTAGTTTCACTGTGTCCCTGTTTAGTTTCTGTTTCCAC
AATCTGTCCATTGATGAGAGTGGTGTGTTGAAGTTTCCTACTATTATTGT
TTGAAGTGCAATGTGTGCTTTGAGTTTTACTAAAGTTTCTTTGGCTGCCT
TTGCATTTGGAGCATGGATATTCAGAATTAGACTTCTGTAAGGAGCAAAA
TGTCAGGTCCAGTTTGTGTAGCCAGTCTGTTAGTCTGTCTTTTTATCGTT
GAATTGAGCCCATTGATATTAAGAGATATTAAGGAAAAGCCATTGTTGCT
CCCTATTATTTTTGTTGCTAGAGCTGGCCTTCTGTTCCTGCGGTTGCCCT
TCTTTTTGGTTGTTTACCCATCACTTTT

Query= MSMg01no114_f08.b1 MSMg01no114_f08.b1 CHROMAT_FILE:
MSMg01no114_f08.b1 PHD_FILE: MSMg01no114_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:00 2005
         (642 letters)



>mm_chr4_67907963_67909006
          Length = 1044

 Score = 1166 bits (603), Expect = 0.0
 Identities = 631/641 (98%), Gaps = 2/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctctcagaatgaccttcactcatttcagttctaaatgttgaaggaagtaggt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctctcagaatgaccttcactcatttcagttctaaatgttgaaggaagtaggt 263

                                                                       
Query: 64  gatgaattagatcttctgcctccctcaggctatggtacagctgtgactgccgatgaagtt 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 gatgaattagatcttctgcctccctcaggctatggtagagctgtgactgccgatgaagtt 323

                                                                       
Query: 124 actgattctaataccacgttgtctcttagcacactgatattttgatgtgtttctgacaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgattctaataccacgttgtctcttagcacactgatattttgatgtgtttctgacaat 383

                                                                       
Query: 184 gaccacacactggggtgccatttagaggatctctgaaaacttcaatctattcaaattgca 243
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 gaccacacactggggtgtcatttagaggatctctgaaaacttcaacctattcaaattgca 443

                                                                       
Query: 244 aaatcagtttcactgaacatgtgcagctttgtcctttgaaagccacattcttggcaagtg 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatcagtttcactgaacaagtgcagctttgtcctttgaaagccacattcttggcaagtg 503

                                                                       
Query: 304 agcatgatttccagaga--aaactttctctcttgaacatggtggcattacatattctctt 361
           |||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 agcatgatttccagagagaaaactttctctcttgaacatggtggcactacatattctctt 563

                                                                       
Query: 362 cctctttaaaacacaaacaggtaattttaggacagcactgatagatgtttctgtcttcct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctctttaaaacacaaacaggtaattttaggacagcactgatagatgtttctgtcttcct 623

                                                                       
Query: 422 aattggaactccttgttcatctcatccaatctgttttcccatcaatgaaaacaatatcta 481
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 624 aattggaactccttgttcatctcatctaatctgttttcccatcaacgaaaacaatatcta 683

                                                                       
Query: 482 attacaaagctaaatatcagtgcctctcctagagaaaacacaaaacatagtgatatttaa 541
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 attacaaagctaaatatcagtgcctctactagagaaaacacaaaacatagtgatatttaa 743

                                                                       
Query: 542 caaaacctccctcagaatcctacatatacggattttcaggaaaaatctgacaggaatacc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caaaacctccctcagaatcctacatatacggattttcaggaaaaatctgacaggaatacc 803

                                                    
Query: 602 ccttattgtctgggttacagtaccccaaattatgtctttaa 642
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccttattgtctgggttacagtaccccaaattatgtctttaa 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1044
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1034
Effective search space:   653488
Effective search space used:   653488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)