BAC Information

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BAC

Clone NameMSMg01-114P23
Chromosome4 (Build37)
Map Location 45,979,752 - 45,980,199
singlet/doubletsinglet
Overlap genenone
Upstream geneGrhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik
Downstream geneTdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114P23.T7 (MSMg01no114_p23.b1)MSMg01-114P23.TJ (MSMg01no114_p23.g1)
ACCAG326742AG326743
length7241,666
length of high quality
(start - end)
451 (36 - 486)---
definitionCHROMAT_FILE: MSMg01no114_p23.b1 PHD_FILE: MSMg01no114_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:49 2005CHROMAT_FILE: MSMg01no114_p23.g1 PHD_FILE: MSMg01no114_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTC
AGTGTAGCCTTGGACTTTGACTGCGGACGCATCAACAAGTCGGGACTGTG
CACTGCTGCCTAGGAGGCTCATTTCCTGAATCCTGACTGTTCTTCCATTT
CAGTCTGTGAGCCGTTGACGAGTGTCCCACCCCTCAGGTTCCTGTGCCGT
TTCTTGTCACTGCTGTCCCCTTCCTTCCTTCCCAGCAACTATTACAGCCT
AATTTTTGTATCAGTAGGTTTATCCATGATTTCAGTGCCTTGTTTGAAGC
ACCAGTTAGCTAATCTCACGCCTTGCTAACTAGCTGGGCCTCTTTTCTCA
GCTTCCTGGTAGTGCTTAGTAGACACCATCTGTATTGCAAGTCCTGCCTA
AGCTGTATGAATGATGCACAATTTGAAGCAGGAAAGTGAAGATGGTCTCT
TAGACAGCAGGTTCTACCCTCTAGGTTCTCTACGCAGAGTGTTCAGACAG
TGGTTCTCAACTTATGGGTCTCGACCCCTTTGTCGGGTAAACAATCCTTT
TCACAGGAGTCAGATATCCTGCATAACAGGTATTTACATTATGATTAATA
GTAGTAGCACAATCACAGTTATGAAGTAGCAAGACNAAAATAATTTTATG
TCTGGCGGGGTCACTACCACATGAGGAACTGTGTTAAAGCGGTTAAGCTT
TACGAAGGTTGAGAGACACTGTGN
TATTACACCGAGGTCTACGGTGGTCTCTGACGTATTANTGTGATGAGCAG
TCGTGCTCACACTGCGTATGTATGGGACGTGCAAGTGGGTGGAGCGTACC
GAGGGGAGGATAAACGTGCGCGTAGATGTCGCAGCCGTATGTAACTATAG
CGGCTGTTACTCTANATTGGTGTACCTAGTGACTAATCGGCTCGANACGG
GAATTAGACCTTTAACTGACGACCCCGGCGTATTCCCGGCGCCTATATAT
CGGTACGTATCAAGCGCGCAAACGCACATAGACGAGTAGTATAACGCCGC
GNTATGCGTCAATATAGCGCGCGCCGAGCTATACTTATTTTCCGGTTCGA
TGTATGTCCTGCACTGTGCCCGTGTATGTGTACGTAACGCCTCTCTGTGT
ATCACGACCCGTTGCGCGCGCGCTCACGATTATTAGACCATCCGACGTTA
TTCCCATACAGCGTGTATATCCCGCCCATATATATCCACGCATGTACCCA
CCGCTGTATGTCGCGTTCTACTATTAATCTCAGGAGACAGGCCCAGTCAA
ATATGGTGCATACGAGTGACCAGTAATCGCGCGGATTTAATCGCGCGTTT
TGAATCGCGTATCATATCTACGACGTTATATTAGTCGCGTCACACACGGT
AGTGCTCGCGGCGTGTAACNGTGCTGGAGATCAGGGAAGACGAACATGAA
CAATAACACTAAGGCGCAGCACGCNCGAGTAATATTATAACGACGCGCGC
CGCAATAATGGTAGTGCGCGGAGTTAGACGCTCATATAGACGTATGACGT
GCTGTTACCGACGAGCGTGTGGCCGGAGCAGAATACCAGGCGAGCATATT
AAATATGCGATCGATAGAGCGCGGTCAATAGAAAGGTGTTGAAATATATA
GCCAGGAGTACGACGATACACGTGTTCGCACGAATATCGCGTGAACAGAA
TTGACGCAGCACGATCGTCGCGAGCCGAGATTGTCGATGCACTCGCATCG
CGCGACGNCGACGCTNACTACATAATATCGACTCGAGTAGAGATTNGACG
GCGCGCGACACTATACATAGCGCGGCGGGTGAGGTCGCACGTAATATATT
ATAAATCCGCGGCGCGNATAACCTAATATACGCGCGCGANAGATATAACG
ATTATCGCGCACGNCGGTATAGTATATATAGCGCACACGTACGTGTAGAC
GCGTATAACCGTGATATATAATGCGCACTACAACGACGCGCGACGGCTGG
CGTGATGATGACGTGATGATNAGTGAGATGCGAAGTATNATATCTCGCGC
GATCTCAATATATATCCCGCGCGCGTGTAGTACCGCCCCGCGTACGCGAC
ACGATAACACAATTACGTGACGATATACAGCGACATACNTTCTCGTCGAC
GCGNTCGCGCTATACAGNTACAGCCGCAGTGTATANCAGCGCGTATATAC
TGCGACGTGGCATAGCNGGCGGCGCAGATACTGAGCGTGNGCGAGCAGTG
GNCATCGCGACTAACCGATACGCGAGACANTAATTCAGTCGTCACAAAAT
ATAGACGACGTCGCTGNTCGNACATGCACGTNAACGATAAATGTCTGTCG
TATAANAACGNCTCGTTACATNCNGCCATTTACTCGATGTCTCATCTCAN
AGGATACGCNTATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_p23.b1 MSMg01no114_p23.b1 CHROMAT_FILE:
MSMg01no114_p23.b1 PHD_FILE: MSMg01no114_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:49 2005
         (451 letters)



>mm_chr4_45979549_45980399
          Length = 851

 Score =  797 bits (412), Expect = 0.0
 Identities = 439/448 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttcagtgtagccttggactttgactgcggacgcatcaacaagtcgggactg 63
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 204 ggaattcagttcagtgtagccttggactttgactgcggacacatcaacaagtcaggactg 263

                                                                       
Query: 64  tgcactgctgcctaggaggctcatttcctgaatcctgactgttcttccatttcagtctgt 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcactgctgcctaggaagctcatttcctgaatcctgactgttcttccatttcagtctgt 323

                                                                       
Query: 124 gagccgttgacgagtgtcccacccctcaggttcctgtgccgtttcttgtcactgctgtcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagccgttgacgagtgtcccacccctcaggttcctgtgccgtttcttgtcactgctgtcc 383

                                                                       
Query: 184 ccttccttccttcccagcaactattacagcctaatttttgtatcagtaggtttatccatg 243
           |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 cctttcttccctcccagcaactattacagcctaatttttgtaccagtaggtttatccatg 443

                                                                       
Query: 244 atttcagtgccttgtttgaagcaccagttagctaatctcacgccttgctaactagctggg 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 444 atttcagtgccttgtttgaagcaccagttagctaatctcatgccttgctaaatagctggg 503

                                                                       
Query: 304 cctcttttctcagcttcctggtagtgcttagtagacaccatctgtattgcaagtcctgcc 363
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctcttttctcagcttcctgatagtgcttagtagacaccatctgtattgcaagtcctgcc 563

                                                                       
Query: 364 taagctgtatgaatgatgcacaatttgaagcaggaaagtgaagatggtctcttagacagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taagctgtatgaatgatgcacaatttgaagcaggaaagtgaagatggtctcttagacagc 623

                                       
Query: 424 aggttctaccctctaggttctctacgca 451
           ||||||||||||||||||||||||||||
Sbjct: 624 aggttctaccctctaggttctctacgca 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)