BAC Information

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BAC

Clone NameMSMg01-115A16
Chromosome4 (Build37)
Map Location 142,682,124 - 142,682,422
singlet/doubletsinglet
Overlap genenone
Upstream gene9030409G11Rik, EG665983, LOC546484, 6330411D24Rik
Downstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115A16.T7 (MSMg01no115_a16.b1)MSMg01-115A16.TJ (MSMg01no115_a16.g1)
ACCAG326776AG326777
length774720
length of high quality
(start - end)
312 (41 - 352)333 (80 - 412)
definitionCHROMAT_FILE: MSMg01no115_a16.b1 PHD_FILE: MSMg01no115_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:53 2005CHROMAT_FILE: MSMg01no115_a16.g1 PHD_FILE: MSMg01no115_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCCCTCCAAAGAACTCCCGGGGTGGCGCAGATTTTCATATGAATGAAGA
GTCACCAATTGATCAGAGATGGTACACAGGGGCTGCCTGCTGTCGTGAGG
CACACACACGATCTACATTTGATAGCTCCTTTTTTTTCCATCAGGATGAG
AAGTGACAGGGTGTATTTTTCATGAAGCTCGGCCATCTCAGTTTCACTTC
TTTTCCTAAATAATCAATCTGCTGGGATCCTAGCTGCAATAAATGTCGTC
ATGATTTGTGACTAACGTCACTGCCAGTTGGTGGGGAGGTGGGGGTGGNC
NNNTTTTTTTTTCCCCCCTCCTCTCGCTCTTTTTCCCCCCCCCCTCCCCC
CCCTTCCCCCCCCTCTCCAAACCTTTCTTTCCCTTTTCCCCCCCCCCCCC
TCCCCTTTCTCCTTCCCTTATTCTCCACCTGCCTCTCCTCTTTCTCCTAT
TCTTCCCCCTCCCCCCCCCCCCTTTCCCCTTCTCTCTTTATCCCTACCCC
TCTTCTCCCCTCTCCCTTCTTCCCCCCCACCCCTCCCTTACCCCCCCCTC
CCTCCCCCCTCTTTTCCTCCTTCCTCCTCCTCCTCTCCCCCTCCGTCCCC
CCTCTTCTTGCCCCCTCTTCCTCCCCCCCCCCCTTTCCCCTCGCTGACAT
CCTCCCCCACCATTACCTCCCCACTCATATCCTCTTCGCTTGCCTCTCCC
ATNACTTCCTTCTACTTATATTAC
TTTTNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACA
GAAACCCTGTCTCGAAAAACAAAACAAAACAAAACAAACAAAAAAAAACA
ACAACAACAAAAAAAGTGAAAGTATAAGCCAGTGGTGTGGTGTGGTGGTA
CACACGTTTAGCCCCAGCACTTGGGACGTCCAGGACTAACTCTGTCTTGA
AAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGGAAGAAAGAAAGA
GAAGCAAAGAAAAGAAGAGGAAAGAAAAGGTTAAGATCCTTATTTTTTCC
AACAAGAAATGATGAATGGGTTTTTGTTTGGACATGGAGGGGGAGGTATA
GGAAGTCTTAGACTGTGCTTTGTCCTTCATCGCGTACCAACTCATATTAC
ACGGTAGGTTTTTTTTAAATTAGACAAAAATTGCCATTTATTAAGCTAAA
TGCATCAAAAAAAATGTTTTAAACACTGTACTGTTTTATCTGTCCAGTGT
CAGATAGCAAATAATTCCGCTATTTGAACCGCGCCCGTGTCTTAACACCC
TTTACGGGTTCTCAAAGGATAGAACACCAACGCGTTATTTCCGACCTTAA
ACCTATTGCACCCCCCATTCTTGGCTATGTCAGCCCCCCTGTTTTCATCA
CCCCCATCTTCCCTTTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_a16.b1 MSMg01no115_a16.b1 CHROMAT_FILE:
MSMg01no115_a16.b1 PHD_FILE: MSMg01no115_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:53 2005
         (312 letters)



>mm_chr4_142681920_142682630
          Length = 711

 Score =  526 bits (272), Expect = e-154
 Identities = 293/300 (97%), Gaps = 1/300 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccctccaaagaactcccggggtggcgcagattttcatatgaatgaagagtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccctccaaagaactcccggggtggcgcagattttcatatgaatgaagagtca 264

                                                                       
Query: 65  ccaattgatcagagatggtacacaggggctgcctgctgtcgtgaggcacacacacgatct 124
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 265 ccaattgatcagagatggtacacaggggctgcctgctgtcctgaggcacacacaagatct 324

                                                                       
Query: 125 acatttgatagctccttttttttccatcaggatgagaagtgacagggtgtatttttcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatttgatagctccttttttttccatcaggatgagaagtgacagggtgtatttttcatg 384

                                                                       
Query: 185 aagctcggccatctcagtttcacttcttttcctaaataatcaatctgctgggatcctagc 244
           | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggctcggccatctctgtttcacttcttttcctaaataatcaatctgctgggatcctagc 444

                                                                       
Query: 245 tgcaataaatgtcgtcatgatttgtgactaacgtcactgccagttggtggggaggtgggg 304
           ||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 445 tgcaataaacgtcgtcatgatttgtgactaacgccactgccagttggtgggg-ggtgggg 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)