Query= MSMg01no115_j18.b1 MSMg01no115_j18.b1 CHROMAT_FILE:
MSMg01no115_j18.b1 PHD_FILE: MSMg01no115_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:35 2005
(526 letters)
>mm_chr4_25858703_25859623
Length = 921
Score = 938 bits (485), Expect = 0.0
Identities = 511/523 (97%), Gaps = 7/523 (1%)
Strand = Plus / Minus
Query: 5 gaattcacttcctgataactcaccagatattgaaaataatgtatcacattctaatttctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattcacttcctgataactcaccagatattgaaaataatgtatcacattctaatttctg 568
Query: 65 ctttagttttacatggttttaagagattgaaatatttaataagaaatatagaagcaggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctttagttttacatggttttaagagattgaaatatttaataagaaatatagaagcaggtg 508
Query: 125 gaaatgagttatctccttgagtg-caggaatgatcattttgaacactaggctgaagaaaa 183
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 507 gaaatgagttatctccttgagtgccagcaatgatcattttgaacacgaggctgaagaaaa 448
Query: 184 gaaacaaaattgggtttttgtatagtgaaatcccagatgaggtcagcatatttgcatgag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaaacaaaattgggtttttgtatagtgaaatcccagatgaggtcagcatatttgcatgag 388
Query: 244 gacctgctgacccaagtgacagggaagagcagctcctgacacacatctgagaaagcaagg 303
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gacctg------caagtgacagggaagagcagctcctgacacacatctgagaaagcaagg 334
Query: 304 atgatgtgctctatgctgctgtgggatcaggaactgagaaatactgaactggcaatatgt 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 333 atgatgtgctctatgctgctgtgggatcaggacctgagaaatactgaactggcaatatgt 274
Query: 364 taaacttctgctcaaatgtactgatcaaaccattccaagagaaaatgaatggaatgagaa 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taaacttctgttcaaatgtactgatcaaaccattccaagagaaaatgaatggaatgagaa 214
Query: 424 atgagaagccacataaatggatgatcacagtcagctattggatggatcacagggccccca 483
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 213 atgagaagccacataaatggatgctcacagtcagctattggatggatcacagggccccca 154
Query: 484 atggaggagctagagaaagtatccaaggagctaaagagatctg 526
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atggaggagctagagaaagtatccaaggagctaaagagatctg 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 921
Length adjustment: 10
Effective length of query: 516
Effective length of database: 911
Effective search space: 470076
Effective search space used: 470076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_j18.g1 MSMg01no115_j18.g1 CHROMAT_FILE:
MSMg01no115_j18.g1 PHD_FILE: MSMg01no115_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:36 2005
(594 letters)
>mm_chr4_25733447_25734440
Length = 994
Score = 1027 bits (531), Expect = 0.0
Identities = 579/595 (97%), Gaps = 2/595 (0%)
Strand = Plus / Plus
Query: 1 aaaaagattaaaaaagagaaaattgacatgcacaccaggaatatacaagaactgctaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaagattaaaaaagagaaaattgacatgcacaccaggaatatacaagaactgctaaca 260
Query: 61 actagggacagacttgtagaaatgccaaaa-tgtgttcagcaaaaagaaaggcctttcaa 119
|| ||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct: 261 acgagggacaaacttgtagaaaagccaaaaatgttttcagcaaaaagaaaggcctttcaa 320
Query: 120 gataattaaatacgcacttttttattatacataaaactaataaaacatgaatgactatgt 179
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gataattaaatacacacttttttattatacataaaattaataaaacatgaatgactatgt 380
Query: 180 gcatcctagataaaaataacactaacattgctacatgagcaattatagtattcagataca 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatcctagataaaa-taacactaacattgctacatgagcaattatagtattcagataca 439
Query: 240 gagagattcagataaagaagccagtattaacagaaatcttaaagctttaagctgtgtcta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagagattcagataaagaagccagtattaacagaaatcttaaagctttaagctgtgtcta 499
Query: 300 tattaagagaattaaagatgaaatattatgtatacatgtaagtccaacgctgaatgcatc 359
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 500 tattaagagaattaaagatgaaatattatgtatacatgtaagtccaatgttgaatgcatc 559
Query: 360 agctcaaaaattctagttaaactataatagatgagtcacagcagcacatgaatatatcat 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 agctcaaaaattctagttaaactataatagatgaatcacagcagcacatgaatatatcat 619
Query: 420 ttcaatgtatctactacttaatcaagaatgcaaggatgcttctacatcaaaatatatatt 479
|||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 620 ttcaatatatctactacttaatcaagaatgcaatgatgcttctatatcaaaatatatatt 679
Query: 480 aatgtgcttcttcatatatcttatcaataagacataaataaaatgtctgcacttagctta 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 680 aatgtgcttcttcatatatcttatcaataagacataaataaaatgtctccacttagctta 739
Query: 540 cataatttttaaaataatgattgatgtaggcatcacatgttgaatatttagcaag 594
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cataatttttaaagtaatgattgatgtaggcatcacatgttgaatatttagcaag 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
