BAC Information

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BAC

Clone NameMSMg01-115P01
Chromosome4 (Build37)
Map Location 6,851,216 - 6,851,687
singlet/doubletsinglet
Overlap geneTox
Upstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115P01.T7 (MSMg01no115_p01.b1)MSMg01-115P01.TJ (MSMg01no115_p01.g1)
ACCAG327445AG327446
length735740
length of high quality
(start - end)
474 (36 - 509)266 (91 - 356)
definitionCHROMAT_FILE: MSMg01no115_p01.b1 PHD_FILE: MSMg01no115_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:01 2005CHROMAT_FILE: MSMg01no115_p01.g1 PHD_FILE: MSMg01no115_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTG
TCTGACAAATCCTGTTTTAGAATTACCTTCTTGGGTGTTTGCAAAATTGT
TAAGGATTTAATAAATTTAAAATCAAATCAATCAGATGTATGCTAATATA
GGAGTATGTTATATGGAATCCATAACTTTATCTAAAAACCTTCTGACTCT
GTTATATTCTTGAATATTTTCCTATTACTGTACTACAGGCAAAAAACAAA
AAACTAAAAATCAAAACAAAAATCTCAAAATTAAATGTAGTAAATAGACA
AGCTCATTTATTAGGCAGTAGGCCAACCTCACAAAATATTGTCAACTAAA
TAACAAAGCTAATTTTTGAATACTTTATGACTTGAAAAATCCTTCTTTAT
GGACAATTACAGTAGAGCTGTTCTCAATGTCCTTCAAACTAGGGCAACAC
TTTCATGGCTATTGCATGGTGTTACTTGGAACCTTGAATCTCTGAGATGG
TTGCAGTGTGTGCAGGTAACTTGTGACTTCCTTCCCACAACAGAAGCTCC
GAGGCTCAGGCCCACCTGAACAATTACATTACACCTCTAACCAAGCAGAG
CAGCTCTTTTTCCTTCCTCTCTCATTTGCGTATGGCACTGGGGTTCTGCA
AGGAACCCCTACGTAAGCAATGCAGTCTTGGTTAATCCTGTGAAACCTGA
TGGATCGCTGTTATTCCCGCCCTGAACTCCCTTAN
AATTTATTATTCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGC
TCTGTACCCCATTTTTAATGGGGTTATTTGAATTTCTGCAGTTCAGCTTC
TTGAGCTCTTTGTATATCTTGGATATTAGTCCCCTATCAGATTTAGGATT
GGTAAAAATTCTTTCCCAATTTTTAAACAGAATTCTTTTTTTTTAATATA
TGAACAGGGGTTTTTATTTATATATTTAGGAATACACAAACACAAAGACA
CACACAGCTAAAATTAACAAAAAATAAATAAATTAAAAGACCATTCACTT
GAGCGGTGGTACTAGGGAAAGCTTGCAGAAAAAAAGGAGAAGGGACAAAG
GATTATAATGATTATGCTTTAGTTCATCATACCCCCCACCTCGCCTATTG
TCACATTCTTACTGGACGTCGCCTCCCTCCATTGACCCCTTCGGTCACAG
CAAATTTTACATTTTTCCTGAACACTTGTCCCCTGTCTCCTCCTGATTTT
GCTCCACTTCCTCCTTTCGCGCCTTTTTTTCTCCCACTGTCCCTTGTGCT
GCCCCTATTCTGTACCTCTCCCCCCTCCTTTGCCTCCTCCCTTTTTCTGT
TTATTTTATTTTTTTTCCTGTCTTCCCCTTCCTCCCTCCCCTTTCTCTCT
TTTACTCCGTTTCTATATTACCCTCCCTCTTCTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_p01.b1 MSMg01no115_p01.b1 CHROMAT_FILE:
MSMg01no115_p01.b1 PHD_FILE: MSMg01no115_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:01 2005
         (474 letters)



>mm_chr4_6851012_6851887
          Length = 876

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%), Gaps = 2/472 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattgtctgacaaatcctgttttagaattaccttcttgggtgtttgcaaaattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattgtctgacaaatcctgttttagaattaccttcttgggtgtttgcaaaattg 264

                                                                       
Query: 65  ttaaggatttaataaatttaaaatcaaatcaatcagatgtatgctaatataggagtatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaaggatttaataaatttaaaatcaaatcaatcagatgtatgctaatataggagtatgt 324

                                                                       
Query: 125 tatatggaatccataactttatct-aaaaaccttctgactctgttatattcttgaatatt 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 tatatggaatccataactttatctaaaaaaccttctgactctgttatattcttgaatatt 384

                                                                       
Query: 184 ttcctattactgtactacaggcaaaaaac-aaaaaactaaaaatcaaaacaaaaatctca 242
           ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct: 385 ttcctattactgtactacaggcaaaaaccaaaaaaactaaaaaacaaaacaaaaatctca 444

                                                                       
Query: 243 aaattaaatgtagtaaatagacaagctcatttattaggcagtaggccaacctcacaaaat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaattaaatgtagtaaatagacaagctcatttattaggcagtaggccaacctcacaaaat 504

                                                                       
Query: 303 attgtcaactaaataacaaagctaatttttgaatactttatgacttgaaaaatccttctt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attgtcaactaaataacaaagctaatttttgaatactttatgacttgaaaaatccttctt 564

                                                                       
Query: 363 tatggacaattacagtagagctgttctcaatgtccttcaaactagggcaacactttcatg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatggacaattacagtagagctgttctcaatgtccttcaaactagggcaacactttcatg 624

                                                               
Query: 423 gctattgcatggtgttacttggaaccttgaatctctgagatggttgcagtgt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctattgcatggtgttacttggaaccttgaatctctgagatggttgcagtgt 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 876
Length adjustment: 10
Effective length of query: 464
Effective length of database: 866
Effective search space:   401824
Effective search space used:   401824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)