Query= MSMg01no116_b19.b1 MSMg01no116_b19.b1 CHROMAT_FILE:
MSMg01no116_b19.b1 PHD_FILE: MSMg01no116_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:16 2005
(641 letters)
>mm_chr4_80485043_80486082
Length = 1040
Score = 1208 bits (625), Expect = 0.0
Identities = 634/637 (99%), Gaps = 1/637 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtgcctatccgttcttaagaccaatgacctagtttccactttgaaaccatctc 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gaattctgtgcctat-tgttcttaagaccaatgacctagtttccactttgaaaccatctc 782
Query: 65 acatgttattgaaaattcatgagaccaaggacacatgcttatattattagattccttaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 acatgttattgaaaattcatgagaccaaggacacatgcttatattattagattccttaaa 722
Query: 125 acactgcttctctcatttgcctttcttttagcccttggggagttacttccggagagggag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acactgcttctctcatttgcctttcttttagcccttggggagttacttccggagagggag 662
Query: 185 ttttagtgtgaagcttctcttgccttctgtgcctttcaagcacctggcgatttctgctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttttagtgtgaagcttctcttgccttctgtgcctttcaagcacctggcgatttctgctct 602
Query: 245 ttaattgcagctcccttctggcaagcatcttattgttgggggttttagaaagtcaggagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttaattgcagctcccttctggcaagcatcttattgttgggggttttagaaagtcaggagc 542
Query: 305 tgttcagggtatctctaggtactgatctccaagggtttatatcacacatacaaaaactag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgttcagggtatctctaggtactgatctccaagggtttatatcacacatacaaaaactag 482
Query: 365 tattgtgcctccaaaaagttagtgacaacttccaaactcattatgaatcaagaacaactg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattgtgcctccaaaaagttagtgacaacttccaaactcattatgaatcaagaacaactg 422
Query: 425 tggttgggctgctggcatttcgacacactcatatggtgctacatgtcacttgtagcctgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggttgggctgctggcatttcgacacactcatatggtgctacatgtcacttgtagcctgg 362
Query: 485 aacaagatgatgccttgtgctcccggctaaaaatatgtaagtcattgaggtggaagttac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacaagatgatgccttgtgctcccggctaaaaatatgtaagtcattgaggtggaagttac 302
Query: 545 acatgcagaactgcagcttttagacacttcccacctgccttttcatttcgttgagccatt 604
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 301 acatgcagaactgcagcttttagacacttaccacctgccttttcatttcgttgagccatt 242
Query: 605 gggaaaacgtcttgagggaatgaagatctacagtcag 641
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggaaaacgtcttgagggaatgaagatctacagtcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_b19.g1 MSMg01no116_b19.g1 CHROMAT_FILE:
MSMg01no116_b19.g1 PHD_FILE: MSMg01no116_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:16 2005
(601 letters)
>mm_chr4_80344132_80345132
Length = 1001
Score = 1131 bits (585), Expect = 0.0
Identities = 597/601 (99%)
Strand = Plus / Plus
Query: 1 attgtattgatgagctatcaataaaaaacttacaaacacagataaagtattgctaactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtattgatgagctatcaataaaaaacttacaaacacagataaagtattgctaactga 260
Query: 61 cttgaaggatagctatgcaatttgataccaattagcaaataatgacttcttatttgcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaaggatagctatgcaatttgataccaattagcaaataatgacttcttatttgcaag 320
Query: 121 aatttttctctgaaaaaggaagagattgtttattaaatggacaggatgggtgttacagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttttctctgaaaaaggaagagattgtttattaaatggacaggatgggtgttacagat 380
Query: 181 atttcatgtaaagccagagtaaatttggtcattcgtaacaaataaagaagttgaggtatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcatgtaaagccagagtaaatttggtcattcgtaacaaataaagaagttgaggtatg 440
Query: 241 ttttagaaagctatgatagataattgtggggaatctcttctatagctagtaagtgtagaa 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ttttagaaagctatgatagataattgtgaggaatctcttctatagctagtaagtgtagaa 500
Query: 301 aatataatgcactgtatctctagtgacactagctgctcttgagagctactgggttgttta 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatataatgcactatatctctagtgacactagctgctcttgagagctactgggttgttta 560
Query: 361 gataataaagactctcctttcgagcaatttgcaaattcatctggaataacaaaaaaccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gataataaagactctcctttcgagcaatttgcaaattcatctggaataacaaaaaaccta 620
Query: 421 ggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacc 680
Query: 481 taaagctttactacagagcaattatggtaaaaactgcatggtagtggtatagagacagac 540
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 681 taaagctttactacagagcaattgtggtaaaaactgcatggtactggtatagagacagac 740
Query: 541 aagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcact 800
Query: 601 t 601
|
Sbjct: 801 t 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
