BAC Information

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BAC

Clone NameMSMg01-120D12
Chromosome4 (Build37)
Map Location 74,821,158 - 74,821,600
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814, LOC636847
Downstream gene3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120D12.T7 (MSMg01no120_d12.b1)MSMg01-120D12.TJ (MSMg01no120_d12.g1)
ACCAG330640AG330641
length887674
length of high quality
(start - end)
---438 (54 - 491)
definitionCHROMAT_FILE: MSMg01no120_d12.b1 PHD_FILE: MSMg01no120_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:35 2005CHROMAT_FILE: MSMg01no120_d12.g1 PHD_FILE: MSMg01no120_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATATTTGCGGCCGCATAAACGACTCACTTTCAAAAAAGAGGATCCTG
CGGAATTCTTTTTCCCCGAGCCCCATTTTTTAATAGAGGCTATATTGATT
TTCTTGGAGTCCACCTTCTTTGAGTATATATATCTCGATATTCAGTCCCC
TACTCTGATTTACGGATTAGGTAAAGATCCTCTTCCCAATCTAGTTGGTG
GCGCTTTTTTGTCTCTATTGATGGGAGTCTTTTGCCTCTACAGAAGCTTT
CGAAGTTTCATGAGTGTCTTATTTGATCCATTCTCGATCTTACAGTCCTC
TGTTATTGTCTGTTCTATTCACCAAATTTTTACTCCCTGTGCATTATTTC
TTTCCGGAACTTTTTCTACTACTTTCTTCCTCCTATAATTCTTTACAAGT
CTCCTGGCTCATATGTAGATAGTTCCATTGTAACCATTTTAATATTTGTC
CCCCCTCTCCACTATGCAGATTTGCTAATGTGATTTGATTCTATCAATTT
ATAAAATGATCATCGAATTCACTTCTCTGCTTTTTGAATGCCTAACAACA
CCTTCCTTTGACCATTTTTTAAATTAACAAAACCTTTCCCGTTTTTTCCT
TTATATCTCCTCTGAATGACTTGTCCTCCTGCCTTCCGCACCATTTTTTT
TATTTTTTATTGTTACCACCTCTCTTGTTTTCCTGTCACGCTCCTCATCA
ATCTTCGTCATTTTCCACATTTCTTATTCCTCTCTATTGTATTTTGACAC
TCTCCTAAACACCCCGCCGACTTATTATATTCCTATTTTCTCCTCTATAC
CTCCTTAACCGCTGCCCTTTATACTTATTTTTATATAGTATATATATTAC
AATGTTAAGGCTACCACCATAGCTTTATTTTTTTTAA
GGCGGCCGCCTGTTCAACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGAATTAAACACAAACAAACCAAATGACCCAATTAAAAAATGAGGTA
TAGAACTAAAACAGAGAATTCTCAATCTAGCAGTCTCTGATAGTTGACAA
GCTCTTAAAGAAATACTCAGTGTATTCAGACATCATGGTTTTATAATGTC
TAATGTTCTGAGCTTCATGGAGTGATTGCGTAGTCTCCTGTCCCCTAAGC
TATCTGAAACAGCAGCTGTACTCAAAGTATAACTTCGCAGAAGAAGATGT
TATCTTGAGAACAAACATTGATTTCAAGAAGTGTGGACCCTGAAGAAATT
TGAGTTTGTAAAAGTTGGCTAACTTATAATTTTTTTAAACAGAATTGTGT
CTCAATTAACACTTTGGCAGATAAAATTGTATGTTTTGTTTACATTTTCA
AAATAGCACCATATATTTTGTCTTTGTGTGTGACTGTATGACATGGTGTA
TCTATGGATTTTCCCAGGAAAACTTGCAGGAATCAGTTATCTTATTCTAT
CAGGTAATTCCTAGAAAGCAAACTCAGGTTATAAGCCTTTCCTCTCTGGG
TTATCTTACCAGCCCAAAATCCCATATTTACCTGTCAAATTTTTGACTGT
GAGATTGCGCAGACATTACTGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_d12.g1 MSMg01no120_d12.g1 CHROMAT_FILE:
MSMg01no120_d12.g1 PHD_FILE: MSMg01no120_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:35 2005
         (438 letters)



>mm_chr4_74820807_74821644
          Length = 838

 Score =  803 bits (415), Expect = 0.0
 Identities = 433/443 (97%), Gaps = 7/443 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   aattaaacacaaacaaaccaaatgacccaattaaaaaatgaggtatagaactaaaacaga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aattaaacacaaacaaaccaaatgacccaattaaaaaatgaggtatagaactaaaacaga 735

                                                                       
Query: 63  gaattctcaatctagcagtctctgatagttgacaagctcttaaagaaatactcagtgtat 122
           |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 734 gaattctcaatcgagcagtctctgatagctgacaagctcttaaagaaatactcagtgtat 675

                                                                       
Query: 123 tcagacatcatggttttataatgtctaat-------gttctgagcttcatggagtgattg 175
           |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 674 tcagacatcatggttttataatgtctaatgcaaagggttctgagcttcatggagtgattg 615

                                                                       
Query: 176 cgtagtctcctgtcccctaagctatctgaaacagcagctgtactcaaagtataacttcgc 235
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgtagtctcctgtcccctaagctatctgaaacagcagctgtactcaaagtataacttcgc 555

                                                                       
Query: 236 agaagaagatgttatcttgagaacaaacattgatttcaagaagtgtggaccctgaagaaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agaagaagatgttatcttgagaacaaacattgatttcaagaagtgtggaccctgaagaaa 495

                                                                       
Query: 296 tttgagtttgtaaaagttggctaacttataatttttttaaacagaattgtgtctcaatta 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttgagtttgtaaaagttggctaacttataatttttttaaacagaattgtgtctcaatta 435

                                                                       
Query: 356 acactttggcagataaaattgtatgttttgtttacattttcaaaatagcaccatatattt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acactttggcagataaaattgtatgttttgtttacattttcaaaatagcaccatatattt 375

                                  
Query: 416 tgtctttgtgtgtgactgtatga 438
           |||||||||||||||||||||||
Sbjct: 374 tgtctttgtgtgtgactgtatga 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)