Query= MSMg01no120_f02.b1 MSMg01no120_f02.b1 CHROMAT_FILE:
MSMg01no120_f02.b1 PHD_FILE: MSMg01no120_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:43 2005
(503 letters)
>mm_chr4_57753164_57754066
Length = 903
Score = 901 bits (466), Expect = 0.0
Identities = 493/502 (98%), Gaps = 4/502 (0%)
Strand = Plus / Plus
Query: 4 ggaattctaggtg-tttcggaacccaagggcagactgcagctcttgccactattgtatgg 62
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaggtgcttt-ggaacccaagggcagactgcagctcttgccactattgtatgg 262
Query: 63 ttttgctatccttgtgtgaggcagggtctcctgcagcccagggtgatctcaaactcacct 122
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttgctatccttgtgtgaagcagggtctcctgcagcccagggtgatctcaaactcacct 322
Query: 123 taaacttcggatcctctttcccctccctcctaagtacccgg-accccaagaatgagccac 181
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 323 taaacttctgatcctctttcccctccctcctaagt-cccgggaccccaagaatgagccac 381
Query: 182 cacacccaggccaactgagtctttggcataaaggacgctgctttagtttcctgtcaatac 241
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cacccccaggccaactgagtctttggcataaaggacgctgctttagtttcctgtcaatac 441
Query: 242 cgctcccagcagatcccccattccccacttttatttgaaaataggctgtacccttatgcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 442 cgctcccagcagatcccccattccccacttttatttgaaaataggctgtacccttctgcc 501
Query: 302 atctgtccccatagtgactccagaggcaagtggttgtgggtcatgtgctcagagcccatg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atctgtccccatagtgactccagaggcaagtggttgtgggtcatgtgctcagagcccatg 561
Query: 362 acaaatattctctgacttcagaggatgctatgggtagggccccattcttttcttttgctt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acaaatattctctgacttcagaggatgctatgggtagggccccattcttttcttttgctt 621
Query: 422 tcctcttgggatcaagatggtgggtcctttttcactctattgccctcataattatgcctc 481
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcctcttgagatcaagatggtgggtcctttttcactctattgccctcataattatgcctc 681
Query: 482 tagattctattcaccttgaatt 503
||||||||||||||||||||||
Sbjct: 682 tagattctattcaccttgaatt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_f02.g1 MSMg01no120_f02.g1 CHROMAT_FILE:
MSMg01no120_f02.g1 PHD_FILE: MSMg01no120_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:43 2005
(384 letters)
>mm_chr4_57846785_57847568
Length = 784
Score = 675 bits (349), Expect = 0.0
Identities = 367/373 (98%)
Strand = Plus / Minus
Query: 12 tagactaggagcccctcccaagaatgtctgtttgtcttgtacacaggttccagtacaata 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagactaggagcccctcccaagaatgtctgtttgtcttgtacacaggttccagtacaata 482
Query: 72 gctaagaacttggaacagccaggctattccggaagtggacctctccccagacaggcagga 131
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 481 gctaagaacttggaacagccaggccattccggaagtggacctctccccagacaggcagga 422
Query: 132 cagagaaggtggggggttgggggatctaagaacaggaaattgcagtgacaggggtagtgg 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagagaaggtggggggttgggggatctaagaacaggaaattgcagtgacaggggtagtgg 362
Query: 192 gagcttgacgtcttgggaacacatcctacaaacagttcaagctgggaggtgctgggtggg 251
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gggcttgacgtcttgggagcacatcctacaaacagttcaagctgggaggtgctgggtggg 302
Query: 252 tgtagggaccaaaagggtgacctcagccaaagtgttgctttgatgtacagacttcctgcc 311
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 301 tgtagggaccaaaagggtgacctcagccaaagtgttgctttgatgtacagacatcctgcc 242
Query: 312 ctacactggctcaactggagaggtttttacatctctctctctctctctctctctctctct 371
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 ctacactggctcaacttgagaggtttttacgtctctctctctctctctctctctctctct 182
Query: 372 ctctctctctctc 384
|||||||||||||
Sbjct: 181 ctctctctctctc 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
