BAC Information

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BAC

Clone NameMSMg01-121H04
Chromosome4 (Build37)
Map Location 93,739,094 - 93,853,894
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121H04.T7 (MSMg01no121_h04.b1)MSMg01-121H04.TJ (MSMg01no121_h04.g1)
ACCAG331561AG331562
length716713
length of high quality
(start - end)
206 (72 - 277)208 (106 - 313)
definitionCHROMAT_FILE: MSMg01no121_h04.b1 PHD_FILE: MSMg01no121_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:13 2005CHROMAT_FILE: MSMg01no121_h04.g1 PHD_FILE: MSMg01no121_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,739,094 - 93,739,295)(93,853,688 - 93,853,894)
sequence
ACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATCTTCTCAAACATAAGTAACAAATTAGGTTTTTTTAACCA
TGGAGATATTATTTACCATTTGCTTTTTGTTCATGGAATAGTGTGGCCTG
TAGTGGGTTTCATTTGTATTGTTAAAATTTGGCTCTAATTTATTTTGTGA
ATTTAATACCCACTAACACTTTACAGAACTCTAAATATATTGTACTATAT
GACCTGAAAGTGGTACGGTCATAAGATGAAAGTAGAAGATTATTTATTAA
TGACTCTGCCATTAACTAGGTAGTCAATGGTCTTCCTTCTGATCTAAACT
CTCATGCAATTTCTGTCTCTACCTCCATCCATGTAAAGGATAGGCTCTCA
AGTTTCCTCTGGCCTTAGTCACAGCTTTGTTGTCATAATGAAGAGCCTAC
GCATTTTGAGCATCCGTTATGCATTCCCTTCCTGTAACCAAACATTTCTC
TTTTTTTTCTAGGCCAGCTAGCTTTTATACTCCCAACACTGTCTTACAGT
TACACCCGCGTACACAACTTCTGTTCTTCCCTTAAATGTACCTTCCCCTA
TCACGCACTAGCTATGGCATTTGTTACCGTCTCTATTGCCCGGCCGCTAA
TGCCCCTGAGATTTTATCACCCCCCCCGCACTTCATATTTACGTCCTTAT
TTTTCCTGTCTGCCCN
CGATGAAGAGAGAGGCCTGGNGGCGCCTGGATGGCCATTTGCGGTGAANN
ANAGAAGGTGGCTGGACTCGAGNNGGACAAAGNCNAAANGAANNAANAAC
AANTCTGTCTTCCTTCCCTCCCTTCCCCCAGACTCTCTTCTTTGACTCCT
GACAGGCCTTAGCCAGAGAGAGCCTGTAATCTATTATGATAACAACAGTA
TAATCCCTTACCTTTGTGTGGGTGTCTTAAGAGCTTTCAAAGTGTGCTCT
CTGCTATGTTATGGCCTTTCATTCAGCCCCTGGGATGAGATGGGGACAGA
TAGAGAAGCGAATTTTAATGGATCTTGCACGCGGCCGCAAAGCGAAGAGC
TGGTTTTTTTTCTCCCCCCCCCCACCCCAAGTTTGCTTTTGTACTTTTAC
ATTAAGTCGAAACTAATTAAATAAATAAAAGCCCGAATTTGTAATGCAAA
CTTTGTCACCTATTAAAATATCCTCATGGGCCCATCCCACGCCGCGTGCA
CATGTTGTATACCTACACCATCCTTTGTCTACATTCCCGTACTCCCCGCC
CGCTCGCGCCCCCGTACCCCCCCTTCCTACCCCCCTTTCATAACCCTCGC
CCCCTCTTTCCTCCGCCCCCCCCTAATTCCGCCCCCTCCCCGTTGCCCGC
CCTTCTTTCTTTTTTTTTTCCCCTGCCCACCCCTCGCCCTTCCCCAGCCC
CTCCTCCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_h04.b1 MSMg01no121_h04.b1 CHROMAT_FILE:
MSMg01no121_h04.b1 PHD_FILE: MSMg01no121_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:13 2005
         (206 letters)



>mm_chr4_93738894_93739499
          Length = 606

 Score =  368 bits (190), Expect = e-106
 Identities = 199/202 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagtaacaaattaggtttttttaaccatggagatattatttaccatttgctttttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagtaacaaattaggtttttttaaccatggagatattatttaccatttgctttttgtt 260

                                                                       
Query: 61  catggaatagtgtggcctgtagtgggtttcatttgtattgttaaaatttggctctaattt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 catggaatagtgtggcctgtagtgggtttcatgtgtattgttaaaatttggctctaattt 320

                                                                       
Query: 121 attttgtgaatttaatacccactaacactttacagaactctaaatatattgtactatatg 180
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 attttgtgagtttaatacccactaacactttacagaagtctaaatatattgtactatatg 380

                                 
Query: 181 acctgaaagtggtacggtcata 202
           ||||||||||||||||||||||
Sbjct: 381 acctgaaagtggtacggtcata 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_h04.g1 MSMg01no121_h04.g1 CHROMAT_FILE:
MSMg01no121_h04.g1 PHD_FILE: MSMg01no121_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:13 2005
         (208 letters)



>mm_chr4_93853488_93854095
          Length = 608

 Score =  393 bits (203), Expect = e-114
 Identities = 206/207 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcttccttccctcccttcccccagactctcttctttgactcctgacaggccttagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgtcttccttccctcccttcccccagactctcttctttgactcctgacaggccttagcca 348

                                                                       
Query: 61  gagagagcctgtaatctattatgataacaacagtataatcccttacctttgtgtgggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gagagagcctgtaatctattatgataacaacagtataatcccttacctttgtgtgggtgt 288

                                                                       
Query: 121 cttaagagctttcaaagtgtgctctctgctatgttatggcctttcattcagcccctggga 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 cttaagagctttcaaagtgtgctctcagctatgttatggcctttcattcagcccctggga 228

                                      
Query: 181 tgagatggggacagatagagaagcgaa 207
           |||||||||||||||||||||||||||
Sbjct: 227 tgagatggggacagatagagaagcgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)