BAC Information

Click to search

BAC

Clone NameMSMg01-121P17
Chromosome4 (Build37)
Map Location 104,821,227 - 104,821,329
singlet/doubletsinglet
Overlap genenone
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513
Downstream genePpap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121P17.T7 (MSMg01no121_p17.b1)MSMg01-121P17.TJ (MSMg01no121_p17.g1)
ACCAG331959AG331960
length699689
length of high quality
(start - end)
---103 (214 - 316)
definitionCHROMAT_FILE: MSMg01no121_p17.b1 PHD_FILE: MSMg01no121_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:57 2005CHROMAT_FILE: MSMg01no121_p17.g1 PHD_FILE: MSMg01no121_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATTTGCGGCGCTATACGAGTCCTATTCGGAGAGATCCGCGATATTAT
ACTTCCCACAAACAGCCACGNAAGNCTGAAGGGACGGCGACAAACAGCGA
CAAATCATTCCCCATCTGGTTTCCAGCCATGCTACAGACCTGTAAGGACA
CGGACAGCCTAGGAACAGCATCTAAACGCACTAAGCCAGAGGCTCACAAC
AGTGGCCCCAGAAATAATCCCAGTAACTAGGGCCACCTAATTACTGACCG
AGGTTTACAAACACAGTGAGAGGGGAGAAAAAGGACTGTGTGCTCAAAAG
GGGTGATTTTATAACCTGCCCTCTCACTGCATATAAAGTTAAATCTTTGT
GTTTTCCCCCCCCCCCCCAACCCCTTTACTGTGCACCATACTAAGTCTTT
CTCTCCCCATATAAAAAGAAAAAATCTGCCGGCGCGAGCCCCTTTTTAAC
ATTCCGCCCCCCCCCACCAGTCCTGATTCCGAGATCCTCCCCCTCACGAA
CACCTTTCCCTTCCAATACCTGGCTACTGCCGCCGAATTTGAAAATGATC
TGCCGAGCCTCATCAAAACTATCCCGCCCGGGCGGCGGCCATTATGAAAT
ATATAGAATATACTGCTACCTGCCGCCCCCGCGTTATTCAACCAAAAATA
ACCCCCCTCCCCCTGCCTCTGCCCTCACCACCACCTTTCTGTATCTCCG
ATGATCGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACACAAGCATACACATACACACACAGACA
CACACACTGATACACACCCCGAGACACAGAGACACACACGGAAAGACATA
CACACGCACACATAGTAACAGAAAGGCGGTCTTTTACCCTCGGAAGGAAA
AAGTATGAGTCGTGAGAAAGTTCCTAATAATAGCAAAGGAGAATTTCATA
TTTTTTTCCAGATTTATTTATTTTTATCTTATGTGTTTGAACGTTTTGCC
TGGATATGCATATATGCATCATATGTGTGCCCATTGCCCTTAGAGGACAG
AAGATTTTTTTTTTTCCCCCCCCCCCCCGAGACATGAATTATTACATTTT
GCTGTGAGGGCGTGTGCGCACTGAAAAAAGAAACTACACCCTCTGTGTGA
GATTTGTATGCTCTTAACTACTGAGGCATCTCTCTAGCCAAAACTTCATA
TTTTTTATTGATTACAATCCACTGAAAGGTAGCCTCTATCATATATAAGA
AGCCCATCCTTTTTTCTATGAAATTTCCTTACCTGCGACATTAAACGAGG
TGTGATCGTCTCCCACTTATTCGCCCACATGCCCCTGTGGATTCTACATC
TTTTTTTTGTGACCTTTTTTATTTTCACCACACCTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_p17.g1 MSMg01no121_p17.g1 CHROMAT_FILE:
MSMg01no121_p17.g1 PHD_FILE: MSMg01no121_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:57 2005
         (103 letters)



>mm_chr4_104821027_104821529
          Length = 503

 Score =  192 bits (99), Expect = 7e-54
 Identities = 102/103 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaaagttcctaataatagcaaaggagaatttcatatttttttccagatttatttattt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagaaagttcctaataaaagcaaaggagaatttcatatttttttccagatttatttattt 244

                                                      
Query: 61  ttatcttatgtgtttgaacgttttgcctggatatgcatatatg 103
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttatcttatgtgtttgaacgttttgcctggatatgcatatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)