Query= MSMg01no122_e18.b1 MSMg01no122_e18.b1 CHROMAT_FILE:
MSMg01no122_e18.b1 PHD_FILE: MSMg01no122_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:36 2005
(779 letters)
>mm_chr4_14105324_14106504
Length = 1181
Score = 1392 bits (720), Expect = 0.0
Identities = 756/770 (98%), Gaps = 6/770 (0%)
Strand = Plus / Minus
Query: 14 gaattcagtaacatctcaaaacctttattctccttccttcacccgtatagaacctctaca 73
||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct: 981 gaattcagtaacatctcaaaaacattattctccttccttcacctgtatagaacctctaca 922
Query: 74 ta--cctaacatttgatgagtttttaaattgaattttaagtgtcttaaacaacatcataa 131
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 taggc--aacatttgatgagtttttaaattgaattttaagtgtcttaaacaacatcataa 864
Query: 132 ttaaatttaaaatgagcacagaacttactaattgtgtctggatgtcacttaattttcacc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttaaatttaaaatgagcacagaacttactaattgtgtctggatgtcacttaattttcacc 804
Query: 192 ctgccatggcctatggcttccacagagttccaatcatgctaacattatttctgtccctca 251
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ctaccatggcctatggcttccacagagttccaatcatgctaacattatttctgtccctca 744
Query: 252 aaccttatgagggcttcttacataggagcaaatgcatatgcctttcttagtgtctgcatc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaccttatgagggcttcttacataggagcaaatgcatatgcctttcttagtgtctgcatc 684
Query: 312 tttccagagctaaacctttatcatttatagttcagattaaaagtcaccataactgaattc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttccagagctaaacctttatcatttatagttcagattaaaagtcaccataactgaattc 624
Query: 372 ttccctaaacattccacctggaagagctagttttattgttgctatggtaacacactattt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttccctaaacattccacctggaagagctagttttattgttgctatggtaacacactattt 564
Query: 432 gattggcagtgtttgattttaac--tgagttgtcttctttgtgacaccggcatcagaagc 489
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 563 gattggcagtgtttgattttaactgtgagttgtcttctttgtaacaccggcatcagaagc 504
Query: 490 agcagaggcccacttataaaggctcattttgcttttctgctacacaaccaggtctgtaca 549
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agcagaggcccacttataatggctcattttgcttttctgctacacaaccaggtctgtaca 444
Query: 550 ttacattcaaagaacagacaatgggtagtagaaaataaatcctataaaatttttttaaaa 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttacattcaaagaacagacaatgggtagtagaaaataaatcctataaaatttttttaaaa 384
Query: 610 ggccaaaaatgtgaaagcatagcatttaaacattcttgcactattcactagctgtgagtt 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggccaaaaatgtgaaagcatagcatttaaacattcttgcactattcactagctgtgagtt 324
Query: 670 ctatggtggggagtacggagtgtgtaggcaacagtctcaaactgtgtcattttattttgc 729
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctatggtggggagtacggagtgtataggcaacagtctcaaactgtgtcattttattttgc 264
Query: 730 atcttacatcctccagagtacttccataataaatgcacattgggcattca 779
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 atcttacatcctccagagtacttccataataaatgcacactgggcattca 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 779
Length of database: 1181
Length adjustment: 10
Effective length of query: 769
Effective length of database: 1171
Effective search space: 900499
Effective search space used: 900499
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_e18.g1 MSMg01no122_e18.g1 CHROMAT_FILE:
MSMg01no122_e18.g1 PHD_FILE: MSMg01no122_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:36 2005
(686 letters)
>mm_chr4_13966122_13967207
Length = 1086
Score = 1280 bits (662), Expect = 0.0
Identities = 680/686 (99%), Gaps = 1/686 (0%)
Strand = Plus / Plus
Query: 1 tagggggagaatcagtctttatcattaacgcctcttaaactgctggacagcgttcactta 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 202 tagggggagaatcagtctttatcattaacgcct-ttaaactgctggacagcgttcactca 260
Query: 61 catatgaagggtagcaggtggtaaggtcagtacacattattcaaatctaaaataacaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatgaagggtagcaggtggtaaggtcagtacacattattcaaatctaaaataacaaaa 320
Query: 121 aacaaacacacacaaaaaaatccaccttcacagcaacctgtagtctagtgtttgatagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaacacacacaaaaaaatccaccttcacagcaacctgtagtctagtgtttgatagac 380
Query: 181 aactgggaaccacagaggggccaagttgacatacaaaattagttaccagtccaggattgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgggaaccacagaggggccaagttgacatacaaaattagttaccagtccaggattgt 440
Query: 241 gtctcacactgcttcacagcccttctcccacaggatttagctttagtgtcttactggctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctcacactgcttcacagcccttctcccacaggatttagctttagtgtcttactggctt 500
Query: 301 tttaaattttattctttgccctttgtttctaaactactctaacaatagtggtcttaatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaaattttattctttgccctttgtttctaaactactctaacaatagtggtcttaatgc 560
Query: 361 ttctgaaggaagctgtgcatttgcatatttgaagaactattaattttcacagtttgagac 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 ttctgaaggaagctgtgcatttgcatatttgaagaacaattaattttcacagtttgagac 620
Query: 421 atttatttgttggatgtttcccacagactatcctaagtttcgaatacaattatcctttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttatttgttggatgtttcccacagactatcctaagtttcgaatacaattatcctttaa 680
Query: 481 cagtcagtgtggcttaactgggtccagcagctgggggatacgggaatagagaggctaacc 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 cagtcagtgtggcttaactgggtccagcagctgggggatatgggaatagagaggctaacc 740
Query: 541 caatttcccagtcagggaaggcaagagcaagagcgggaggtggaagaccacacatctgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caatttcccagtcagggaaggcaagagcaagagcgggaggtggaagaccacacatctgat 800
Query: 601 gctccctcacaagcctggggaggaaggacagaaactgccagaagctttgagaagcttctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctccctcacaagcctggggaggaaggacagaaactgccagaagctttgagaagcttctg 860
Query: 661 caaaagcatagggagcaaattggctc 686
|||||||| ||| |||||||||||||
Sbjct: 861 caaaagcacaggcagcaaattggctc 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
