Query= MSMg01no122_m05.b1 MSMg01no122_m05.b1 CHROMAT_FILE:
MSMg01no122_m05.b1 PHD_FILE: MSMg01no122_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:35 2005
(660 letters)
>mm_chr4_22908432_22909490
Length = 1059
Score = 1207 bits (624), Expect = 0.0
Identities = 651/660 (98%), Gaps = 1/660 (0%)
Strand = Plus / Minus
Query: 1 atctttctcatgggaacgacacccttgctgccctctttgggaccctactgctttctctct 60
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 859 atctttctcatgggaacgacacccttgctgacatctttgggaccctactgctttctctct 800
Query: 61 gtatctagttcatgctcagtttcaatcaattcacatgcatgaagttttaaaagtgtctac 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct: 799 gtatctagttcatgctcagtttcaatcacttcacatgcatgaagttttaaaagagtcttc 740
Query: 121 agcgaatgacaaggatgctggtattgttcattctacggtacagaagtgcagaggttcagt 180
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agcaaatgac-aggatgctggtattgttcattctacggtacagaagtgcagaggttcagt 681
Query: 181 ttttggcttttctttatttctcagcttttatagaatggatgccaccaatgtcacctttca 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttggctattctttatttctcagcttttatagaatggatgccaccaatgtcacctttca 621
Query: 241 gtaaaatagtcatggacagcagaaggcctggaaatgccaattgtaattaactttcttttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtaaaatagtcatggacagcagaaggcctggaaatgccaattgtaattaactttcttttc 561
Query: 301 aaatatgtttgacagtttcatgctgagaagtgcttcttaccttttgaactttcagattgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatatgtttgacagtttcatgctgagaagtgcttcttaccttttgaactttcagattgc 501
Query: 361 ttggctgggcaaaatgtgtatcattttcttttaaaattgccttacaaagagctatgtact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttggctgggcaaaatgtgtatcattttcttttaaaattgccttacaaagagctatgtact 441
Query: 421 atgctattcctgcacacgtcagccatttataagagatttagatttttaagcagattatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgctattcctgcacacgtcagccatttataagagatttagatttttaagcagattatcc 381
Query: 481 ttgttccaagtgagagaccttgcttttgtctgaagcacaagctatgatcaggtgtacatc 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 ttgttccaagtgagagaccttgcttttgtctgaagcacaggctatgatcaggtgtacatc 321
Query: 541 agagtcccaggacaaggacattcagatattcataaatgtcaaagaggatgacccttcctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agagtcccaggacaaggacattcagatattcataaatgtcaaagaggatgacccttcctc 261
Query: 601 atggcctatcatcccagctgctctcccaggcaatattccacaaaactgtgagagccagaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atggcctatcatcccagctgctctcccaggcaatattccacaaaactgtgagagccagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1059
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1049
Effective search space: 681850
Effective search space used: 681850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_m05.g1 MSMg01no122_m05.g1 CHROMAT_FILE:
MSMg01no122_m05.g1 PHD_FILE: MSMg01no122_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:35 2005
(689 letters)
>mm_chr4_22753611_22754699
Length = 1089
Score = 1317 bits (681), Expect = 0.0
Identities = 687/689 (99%)
Strand = Plus / Plus
Query: 1 aaattttgacagaagtaagtggtcccttctcttaaccatgcccatctattttgggtgatc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aaattttgacagaagtaagtggtcccttcccttaaccatgcccatctattttgggtgatc 260
Query: 61 tcttcaggttctctcttccccctgttgggtattctgccaacatcatccacactgggtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcaggttctctcttccccctgttgggtattctgccaacatcatccacactgggtctt 320
Query: 121 gggagcccctagcatccctggcatttgggactttttagtggttattccattccccaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagcccctagcatccctggcatttgggactttttagtggttattccattccccaccct 380
Query: 181 ccactgccatatatatctatccagtctcctgaccctttagacttctattctgtctcattc 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ccactgccatatatatctatccagtctcctgaccctttggacttctattctgtctcattc 440
Query: 241 tgtaattgaacttgcctccccttttccctccccctcctcttttccacctgggaacctccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaattgaacttgcctccccttttccctccccctcctcttttccacctgggaacctccc 500
Query: 301 ttcctctaccttccatgattattttgcctttctaaaaccctacaaaatgtggctcatggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctctaccttccatgattattttgcctttctaaaaccctacaaaatgtggctcatggc 560
Query: 361 tattttctgggaacctgagtatggacctggccagaattagtcgacctggccagtatttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattttctgggaacctgagtatggacctggccagaattagtcgacctggccagtatttaa 620
Query: 421 ttaaacttgattcaaattttgctaaaaattgtgatagtagtagggacaggagccttctag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaacttgattcaaattttgctaaaaattgtgatagtagtagggacaggagccttctag 680
Query: 481 tttacatctgcacctggagctcatcctctgccacagggctccatactcaaatagctctgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttacatctgcacctggagctcatcctctgccacagggctccatactcaaatagctctgg 740
Query: 541 aagcgagctagcctcccaggagtgcagataagcctgtgagtgtaagtaagaccaccacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagcgagctagcctcccaggagtgcagataagcctgtgagtgtaagtaagaccaccacat 800
Query: 601 ctcttcaaagaccaccacatctcctggcccaagagggacccctccagagccattaggaca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctcttcaaagaccaccacatctcctggcccaagagggacccctccagagccattaggaca 860
Query: 661 caggaaccaaggaccagctagagataaaa 689
|||||||||||||||||||||||||||||
Sbjct: 861 caggaaccaaggaccagctagagataaaa 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
