BAC Information

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BAC

Clone NameMSMg01-122O06
Chromosome4 (Build37)
Map Location 65,738,465 - 65,739,289
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122O06.T7 (MSMg01no122_o06.b1)MSMg01-122O06.TJ (MSMg01no122_o06.g1)
ACCAG332634AG332635
length1,0701,073
length of high quality
(start - end)		841 (52 - 892)775 (81 - 855)
definitionCHROMAT_FILE: MSMg01no122_o06.b1 PHD_FILE: MSMg01no122_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:52 2005CHROMAT_FILE: MSMg01no122_o06.g1 PHD_FILE: MSMg01no122_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATTCNNNNNNNATCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAATCTTTAGCAGCATCTTTAATAATTTAAAATGTAGACA
CTAGTTAGTTGGTTAAATAACGAGGCAGATATTAAGTTACATTAAAGATA
AATTTTAACACAATCTCTAATATTGATGACATTCATCTTTTTTTATTACA
TATGTGATCTATGTTTATTTCCCATAAAGAGGGGAAAGGTGACCAAAAAG
AAGAAAATTATTGTTTAGAGGAAATTATCCTTAATGTTTTGTTGGTATAC
ATTTTTATTTTGAAGATATTAATGTTTAGATCTATATATGCACACATAGA
AATACACCTTACATAAATAGAAACTATACAATAGAGAAATGCTAAGGATA
TAATTGGCTCCCAATACATAGTTCAATCATAAGTTTGTATTCAGCTATTT
TTTACAAAACTCACAGGGCATCCTCAAGTCATTAAAAAATAGTGAACATT
GTAAAATATATGCATAACAAATTTATGGTTCAATACACAAACAAGAGGAA
ATAATAGTGTTTGGCTTAGTTACTGTGTTTTCTTTTCTGTATTATGACTT
TTGAAAAAAAATTGTAAAACCAAAAGTCCTATTTTGAAAGAACATCAGAA
ACAGTTGAAGGAATAATTAATAATATTTGTCTTTGGTGGATAGATCTTCA
GTAGACTTGCAGCTATCTTCTAAAATGCTATCATAAGAAAGAAGGGAGTG
CCCAGACCTTGGTATTCCAAATAGATAAGTTGAATCTGGATGGTGGGTAT
CACAGGCGACCTGATTCCCAACACCAGCAGAGCCTCAAATCTGCTCTTTA
ACGATTGCCCCATCCCAGAACTCACTTTGTATCCTATTTCCATTTTACAA
GTTACGAGCCATATGACCTTGACCAAGCCATTTGTAGCATCTCAGACTCT
CATATTCTCATCGTTTAAATGAAAGTAGCAATGGCCAACCTCATCCCAAC
CTTTGTAAAGGAACAAACACATTCCTTATTTTTGTAAAAATTGGAATTAA
AAAGTGGTTAAGTATTTATC

CCTATATNTNNNNNAACATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGCAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGGTACAA
TTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACAC
TATGCCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAG
AGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCA
TATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCA
TACCCTAGCAAGATTTTGTTGAAAGGAGCCAGATGTAGCTATCTCTTGTG
AGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCT
AATGAATGGATCACAAGGGCTCCCAATGGAGGAGCTAATGAAAGAACCCC
AGGGAACTAAAGGGGATCTTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_o06.b1 MSMg01no122_o06.b1 CHROMAT_FILE:
MSMg01no122_o06.b1 PHD_FILE: MSMg01no122_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:52 2005
         (841 letters)



>mm_chr4_65738236_65739477
          Length = 1242

 Score = 1547 bits (800), Expect = 0.0
 Identities = 819/826 (99%), Gaps = 4/826 (0%)
 Strand = Plus / Minus

                                                                        
Query: 19   gcagcatcttt--aataatttaaaatgtagacactagttagttggttaaataacgaggca 76
            ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 gcagcat-tttaaaataatttaaaatgtagacactagttagttggttaaataacgaggca 996

                                                                        
Query: 77   gatattaagttacattaaagataaattttaacacaatctctaatattgatgacattcatc 136
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  gatattaaattacattaaagataaattttaacacaatctctaatattgatgacattcatc 936

                                                                        
Query: 137  tttttttattacatatgtgatctatgtttatttcccataaagaggggaaaggtgaccaaa 196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  tttttttattacatatgtgatctatgtttatttcccataaagaggggaaaggtgaccaaa 876

                                                                        
Query: 197  aagaagaaaattattgtttagaggaaattatccttaatgttttgttggtataca-ttttt 255
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 875  aagaagaaaattattgtttagaggaaattatccttaatgttttgttggtatacatttttt 816

                                                                        
Query: 256  attttgaagatattaatgtttagatctatatatgcacacatagaaatacaccttacataa 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  attttgaagatattaatgtttagatctatatatgcacacatagaaatacaccttacataa 756

                                                                        
Query: 316  atagaaactatacaatagagaaatgctaaggatataattggctcccaatacatagttcaa 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  atagaaactatacaatagagaaatgctaaggatataattggctcccaatacatagttcaa 696

                                                                        
Query: 376  tcataagtttgtattcagctattttttacaaaactcacagggcatcctcaagtcattaaa 435
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  tcatcagtttgtattcagctattttttacaaaactcacagggcatcctcaagtcattaaa 636

                                                                        
Query: 436  aaatagtgaacattgtaaaatatatgcataacaaatttatggttcaatacacaaacaaga 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635  aaatagtgaacattgtaaaatatatgcataacaaatttatggttcaatacacaaacaaga 576

                                                                        
Query: 496  ggaaataatagtgtttggcttagttactgtgttttcttttctgtattatgacttttgaaa 555
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575  gaaaataatagtgtttggcttagttactgtgttttcttttctgtattatgacttttgaaa 516

                                                                        
Query: 556  aaaaattgtaaaaccaaaagtcctattttgaaagaacatcagaaacagttgaaggaataa 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515  aaaaattgtaaaaccaaaagtcctattttgaaagaacatcagaaacagttgaaggaataa 456

                                                                        
Query: 616  ttaataatatttgtctttggtggatagatcttcagtagacttgcagctatcttctaaaat 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455  ttaataatatttgtctttggtggatagatcttcagtagacttgcagctatcttctaaaat 396

                                                                        
Query: 676  gctatcataagaaagaagggagtgcccagaccttggtattccaaatagataagttgaatc 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395  gctatcataagaaagaagggagtgcccagaccttggtattccaaatagataagttgaatc 336

                                                                        
Query: 736  tggatggtgggtatcacaggcgacctgattcccaacaccagcagagcctcaaatctgctc 795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335  tggatggtgggtatcacaggcgacctgattcccaacaccagcagagcctcaaatctgctc 276

                                                          
Query: 796  tttaacgattgccccatcccagaactcactttgtatcctatttcca 841
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275  tttaacgattgccccatcccagaactcactttgtatcctatttcca 230


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 841
Length of database: 1242
Length adjustment: 10
Effective length of query: 831
Effective length of database: 1232
Effective search space:  1023792
Effective search space used:  1023792
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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