BAC Information

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BAC

Clone NameMSMg01-122P10
Chromosome4 (Build37)
Map Location 27,457,401 - 27,458,086
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122P10.T7 (MSMg01no122_p10.b1)MSMg01-122P10.TJ (MSMg01no122_p10.g1)
ACCAG332690AG332691
length1,1681,194
length of high quality
(start - end)
685 (128 - 812)705 (70 - 774)
definitionCHROMAT_FILE: MSMg01no122_p10.b1 PHD_FILE: MSMg01no122_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:01 2005CHROMAT_FILE: MSMg01no122_p10.g1 PHD_FILE: MSMg01no122_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTATTTNNNNAAACATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATATCTCTCACATCCTCCTTAAGCACACTGGAGCCATTCA
GGGTAAAAAAGGAGAACTGACCTGTTAAATAATTTTGTCCTATAAGCAAA
TCAATAAATAATGAGCTTATCACATTATTAATAGTGCTACTGTCAAGAGT
AGTTGAGAACCAATGTAATGTGTTCAATTTTATATGAGAGGTCATTTTTA
TATTTTAAAGTATAGTAAATTAACGTTTTACATATTCACATATGCATATG
TTAGACTTCCAGCAGACATGGAACTTTTAATATTATTGTATTTTTTGAAA
CTAGTTGAAAAAAGCATAAGGAAAAATTGAAAAGGCTTCTCAAGAAAAAT
GATATAAAAGGAAACAGGCAGTTTTTGCAGATATAAGGATGTGTTTTGCT
TTATAAATATCCTTAAGTAATGCTCAGCCTGGAAAGATGCAGGTATGGTG
ACTAGACATAGGTTCTGGGAATCTAAATAATTCTCTATTTGCATTATAAA
TCTGGTCAGTTCTTTTAGAAGCACATTTCAAATAAATCGTAGAATTAATG
TGCTATATCTACATTGAGAAATCCAAATTTTTGAGATACCTCTGACAACT
GAGCAATTGAAAAGGTATGCATAAATTACAGTGTAATGGTTCTTGGTAAA
GGTTTCCTTTGGAATATTCAGCTGCAGTCGAGGAAGTCAGTGCATATCAG
CAAGTATCCCTCTGTTCTCATCTGAGCCTCAAAATGCTATTTAATTCTTT
TTTCCTTAATCCCCGAACTCTTTGAATTCCTATGCAGATAGTAATAAATT
GAAACCCATATCCCCCCCCAGCCCCTTACAAATTTCCAATTGTGCCTAAT
GTTATCCTATAATTGTATTTAAGTTTTAAAATTTTTTCATTTTACAATCC
CTTCCCTAATAGTCCCTGTTTTTTCTGAAATAAGCTTGAATATTTTCCTT
TAATTTTGTGTTGGGGGGGGTTTTAATTTCTTCCTATATGCCCTCTAAAA
AACCCTTTACACCCCAAATGTGGTTCTCTGGCCCCACCATTCTTGGAAGG
GGCAATTTAATTGAGATCCTTTTATACCCCTTAAAAACCAATTTTCTTTG
GCACCTCAACCTTTCTCC
TTTTTTTTAAGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTCTCCTTTGCTGCAGAGACACTTCTGTG
ATGAGGAATACTTACATACTTATTTGTGGGTATAAGGTAAAGATTTAGAA
TGTAGTATTTTGCTTTTCCAGCAGGGTGGTGTCAGTAGACATATTTCTAA
GAACTGTGAGGTTTCCAAGCCCAGAAAAATGGCTGGCTAGATTTCCAGTA
ACAGGCATAATTTCCCTTCTAATGGGTGAGCCTTAAGTTGAGTTCAAGAG
CTGTTTGTTGCAATTGGCATATGAGTGTCACTTTAAGAATTGCTTACATT
AACAATAACTGTCATGGTTCATAGGTGTTGTAGCTAGTTAGAACTGTGTA
ATTGTATAACTCACGTTGAAGATGGAGCCATAGTATTTTCTGGAACCATA
GATGCTAAACCACAGTAAAGAGGCCCTCAAAATCTGATTTAATACAGTCA
TCTAAGTTCTGTATCTCAAATGTGCGTTGTCTTTAGGTCAGAGTCACTCT
CCAGGATACCCAAAGAGCAGCTGAAAGAGTCAGATGCAGATATTTCCACC
CAACCAATGGGCAGAAGCTGCTGACCCCTGTGGTTGAATTAGTGAAAAGC
TGGAAGAAGATGAGGAGGAGAGCAACCCTTGTGGAGGATCAGATGTCTCA
ATTGACCTGTACCCCTGAGATCTCTGCGATTCTGGACCACCGAGCAGGCA
ACATATACCAGCTAATATGAGGCCCCAAACACATATACAGCAGAGGACTA
CTTCCTCTAGGTTCAATCAGAAGATGCCCCTAACCCTCCAGAGACTGGAA
GCCCCAGGCAGTTTAAAAGGCCTGGTTGAGTGGTTGTTTTGTTGCTGGTG
ACATCCTCATGTATTCTAGTTTTGTTCAGGATGTTTTACCTTTCTTCTTT
TCCCTTTTTCCTTTATCTTCTCTTTTCTTCTCCTCCTCCTCTTCTCTTCC
TTCTCTTTCTTCTTTATTATCTTTCTCCCACTTTCTCACCCCTTTCTCCT
CTCCTTTTTCTCCTTCATCATTTCTTTTCATCTCTTTTCTATCATTCTTT
CTCTTACTCTCTCTCTTCTCCTCCCTCCCCTTCTTCTCTCTCTCTTCTCC
TTCTCTCTTCCTCNCTTCTTTTCTCCTTCTCATTCTCTGCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_p10.b1 MSMg01no122_p10.b1 CHROMAT_FILE:
MSMg01no122_p10.b1 PHD_FILE: MSMg01no122_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:01 2005
         (685 letters)



>mm_chr4_27457201_27458286
          Length = 1086

 Score = 1272 bits (658), Expect = 0.0
 Identities = 679/686 (98%), Gaps = 1/686 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataattttgtcctataagcaaatcaataaataatgagcttatcacattattaatagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 aataattttgtcctataagcaaatcaataaataatgagcttatcacattattaatagtgc 827

                                                                       
Query: 61  tactgtcaagagtagttgagaaccaatgtaatgtgttcaattttatatgagaggtcattt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tactgtcaggagtagttgagaaccaatgtaatgtgttcaattttatatgagaggtcattt 767

                                                                       
Query: 121 ttatattttaaagtatagtaaattaacgttttacatattcacatatgcatatgttagact 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 766 ttatattttaaagtatagtaaattaacattttacatattcacatatgcatatgttagact 707

                                                                       
Query: 181 tccagcagacatggaacttttaatattattgtattttttgaaactagttgaaaaaagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tccagcagacatggaacttttaatattattgtattttttgaaactagttgaaaaaagcat 647

                                                                       
Query: 241 aaggaaaaattgaaaaggcttctcaagaaaaatgatataaaaggaaacaggcagtttttg 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 646 aaggaaaaattgaaaaggcttctcaagaaaaatgataaaaaaggaaacaggcagtttttg 587

                                                                       
Query: 301 cagatataaggatgtgttttgctttataaatatccttaagtaatgctcagcctggaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cagatataaggatgtgttttgctttataaatatccttaagtaatgctcagcctggaaaga 527

                                                                       
Query: 361 tgcaggtatggtgactagacataggttctgggaatctaaataattctctatttgcattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgcaggtatggtgactagacataggttctgggaatctaaataattctctatttgcattat 467

                                                                       
Query: 421 aaatctggtcagttcttttagaagcacatttcaaataaatcgtagaattaatgtgctata 480
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 466 aaatctggtcagttcttttagaagcacatttcaaataaatcatagaattaatgtgctaca 407

                                                                       
Query: 481 tctacattgagaaatccaaatttttgagatacctctgacaactgagcaattgaaaaggta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 406 tctacattgagaaatccaaatttttgagatacctctgacaactgagcaattgaaaagtta 347

                                                                       
Query: 541 tgcataaattacagtgtaatggttcttggtaaaggtttcctttggaatattcagctgcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgcataaattacagtgtaatggttcttggtaaaggtttcctttggaatattcagctgcag 287

                                                                       
Query: 601 tcgaggaagtcagtgcatatcagcaagtatccctctgttctcatctgagcctcaaaatgc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcgaggaagtcagtgcatatcagcaagtatccctctgttctcatctgagcctcaaaatgc 227

                                     
Query: 661 tatttaattc-ttttttccttaatcc 685
           |||||||||| |||||||||||||||
Sbjct: 226 tatttaattctttttttccttaatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space:   726300
Effective search space used:   726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)