BAC Information

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BAC

Clone NameMSMg01-122P13
Chromosome4 (Build37)
Map Location 42,903,475 - 42,904,178
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635
Downstream geneN28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122P13.T7 (MSMg01no122_p13.b1)MSMg01-122P13.TJ (MSMg01no122_p13.g1)
ACCAG332696AG332697
length1,2961,107
length of high quality
(start - end)		184 (126 - 309)704 (83 - 786)
definitionCHROMAT_FILE: MSMg01no122_p13.b1 PHD_FILE: MSMg01no122_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:02 2005CHROMAT_FILE: MSMg01no122_p13.g1 PHD_FILE: MSMg01no122_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTAGTATNNNNNGGCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCCAGCCCCTCACTGCCTTTAAGAGGTTGCAGAAGCACCC
AGCCTGGTCGACTGACCTTAAGGCTGGTTCTCAGTCTCCCCAGTGTGAAG
ACAGTATTGGTGGCCTCCCCCCGATGATCTTATGCAAACCGATCTAAAGA
TTCTTCTTCTAATATATTAGCTGCTTTCAGTCATCCACACCCAGTCATTG
GTTTAGATTTCACTTAGAGTAAGGGCGTGGGTGGGGCAGGGTGGGGGGTG
AGGGTGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTATTTTATTTTTTTTATAATTTTAATTTATTTTTTTTTTT
TTTTTTTTATTTATTTTTTTTTTTTTTTTTTTATTTATTAAATTTATTTT
TTTTTTTTCCCCCCCCCAANTTTTCCTTCTCTCTTTTAAAAAAAAGGGTG
GGGTCTTTTTTTTTTTTTTACTATCTTTTTCTTTCTTTTTTTCTTTTTAT
TATTTATTTCTTTTTTCTATTTTCTTTTTTTTTTTTTTCTTCTCCTTATT
TTTTTTCTCTTTACTTTATATTTTTTTTCTTTATTTATTCTTTTTTTTTT
CTCTTTTCTTTTTATTCTTTTATTTCATTTTTTTTATTATATCTTTTATT
TTTTCCTCTTCTTTTTTCTTTCTTTTCTCTTTTATTCTCTTTTTTCTTTT
CTCTTCTTTTTCTCTTCTCTTTTATTATCATCTCTTTTTTTTTTCTACTT
CTTTTTTATCTTTTTTTTTTTATTTCTTTTTCTATTTTTTATTCTCTTCT
TTTTTCTTTCTTTTATTATTCTTTTATTTATTTATTCTCTCTTTTATTTC
CTTTTTTTACTTCTATCTTTCTTTCCTTCTATCTCTTCTATTTCTCACAC
TTCCTTTATTTATCTTTTTCCTTCTTTTCTTCTTCTTTTTTTTCTCTTTT
TTCTTCTTTTTTATTTACTCATTTTTTTATTCATTTCTTCATTATATTCT
TTTTCTATTTCTTACTTATTTTTTTCTTCATATTGTACTTTTTATATTAC
TACTTTTTTTTTTATTATTTTCTTTTCTCTCTTCTCTTTGTCTATCTCCC
TTATTATCACTTTCTTTTACTTCCTTCTTTTATTATTTATTTATATTTTA
GTTTCTACTTTCTTCTTCTCTTCTTCTTTTCTTCTTTTCTTTTTACCTTT
ATTCTTATCTAGTTCTTTTTCCTNTCTCTTTTTTACTCTTTCTTCT

CCCCGGAAGACTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTTAAAGTCTGTGTGACATGCAGCTGAGAC
CCAGTTCAACACTTCCTTACTTGTGTGGGCATGATGCTTGTTACGATTAC
AACAGCCTGAGGGCACCTGCAAACCCCATCACTTGAAGCCTTTGCTTAGG
GTCCCAGTGCCAGGAAAATAAACATTATTCCCTGATTTTATGTTCCTCTC
TCAACTCTTTATTATCTATAGGAATGTTTGTTGGTTACAGGCTCATGCTA
CCTATAGGAGATATTGCAGTAAAGACCAGACAAGGGAGTCTCGCACACCC
AAGACTTGTATCTTGTGGTGGAGGTAACAATAAATAAGGGACTTATTGGC
ATAATACTTGGACAATAAACAATATGGATGTTTGATGGCGGCCTAATATA
AACCATATATGGACACTCTAATCCTACCTACCTATAACATCTCCACAAAC
ACAACCCCCGATTTCAATATGGGTACAAGGTGCACAGGGTACAGATTTGG
AGAACAAGGCACAGAGCCAGAGGTAGGAAGCAGGGGCTTACCCCAGGAGT
GGGAACAGAAGTCATAGCTCAGTTCAGGAGAAGACTTTACTGGGTGGAAA
AGAGAACTCACCCTGTGTGTTGAGAGGCCTCACGATTTCCTGCTAACAAA
GAGTGGTGCTTATCTGTACCCTGGTGGGACTTAGGGTTTTAGTCAAATTT
TAATCATATTCATTTACTTCTTATCCTTCCCCATTATGGACACCCACAGA
CACATACACACACAGACCCAGACACAGACACACACACACACACACACACA
CTCACACACACTCACGGAGGGGTGTTAAAGAGAATGAGCTCATAATCTAA
AGAAAATCTNAAGAAAAATAAGGGAGGAAAATATCTGCAAATGGAAGAAC
AAGTGGAGATGAAAGCCTGGATAAAACTTTTCAAAACTGTGGGAAAAAGC
TTGAAAACCCCCAATGGCTACTGGGCTGGCTGTACCTGGTTTTTTGGGTA
AACCCCCATAAAAAAAGAGGGAAATGGCCCCCAAACCACTTTTTTTAAAA
AAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_p13.g1 MSMg01no122_p13.g1 CHROMAT_FILE:
MSMg01no122_p13.g1 PHD_FILE: MSMg01no122_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:02 2005
         (704 letters)



>mm_chr4_42903275_42904378
          Length = 1104

 Score = 1309 bits (677), Expect = 0.0
 Identities = 698/705 (99%), Gaps = 2/705 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacatgcagctgagacccagttcaaca-cttccttacttgtgtgggcatgatgcttgt 59
           ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 904 gtgacatgcagctgagacccagttcaatagc-tccttacttgtgtgggcatgatgcttgt 846

                                                                       
Query: 60  tacgattacaacagcctgagggcacctgcaaaccccatcacttgaagcctttgcttaggg 119
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 845 tacgattacaacagcctgagggcacctgcaaaccccatcacttgaaacctttgcttaggg 786

                                                                       
Query: 120 tcccagtgccaggaaaataaacattattccctgattttatgttcctctctcaactcttta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tcccagtgccaggaaaataaacattattccctgattttatgttcctctctcaactcttta 726

                                                                       
Query: 180 ttatctataggaatgtttgttggttacaggctcatgctacctataggagatattgcagta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttatctataggaatgtttgttggttacaggctcatgctacctataggagatattgcagta 666

                                                                       
Query: 240 aagaccagacaagggagtctcgcacacccaagacttgtatcttgtggtggaggtaacaat 299
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aagaccagacaagggagtctcacacacccaagacttgtatcttgtggtggaggtaacaat 606

                                                                       
Query: 300 aaataagggacttattggcataatacttggacaataaacaatatggatgtttgatggcgg 359
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaataagggacttagtggcataatacttggacaataaacaatatggatgtttgatggcgg 546

                                                                       
Query: 360 cctaatataaaccatatatggacactctaatcctacctacctataacatctccacaaaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cctaatataaaccatatatggacactctaatcctacctacctataacatctccacaaaca 486

                                                                       
Query: 420 caacccccgatttcaatatgggtacaaggtgcacagggtacagatttggagaacaaggca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caacccccgatttcaatatgggtacaaggtgcacagggtacagatttggagaacaaggca 426

                                                                       
Query: 480 cagagccagaggtaggaagcaggggcttaccccaggagtgggaacagaagtcatagctca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cagagccagaggtaggaagcaggggcttaccccaggagtgggaacagaagtcatagctca 366

                                                                       
Query: 540 gttcaggagaagactttactgggtggaaaagagaactcaccctgtgtgttgagaggcctc 599
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtgcaggagaagactttactgggtggaaaagagaactcaccctgtgtgttgagaggcctc 306

                                                                       
Query: 600 acgatttcctgctaacaaagagtggtgcttatctgtaccctggtgggacttagggtttta 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acgatttcctgctaacaaagagtggtgcttatctgtaccctggtgggacttagggtttta 246

                                                        
Query: 660 gtcaaattttaatcatattcatttacttcttatccttccccatta 704
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtcaaattttaatcatattcatttacttcttatccttccccatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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