BAC Information

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BAC

Clone NameMSMg01-124F23
Chromosome4 (Build37)
Map Location 99,505,745 - 99,506,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp
Downstream geneBC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573, Cachd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124F23.T7 (MSMg01no124_f23.b1)MSMg01-124F23.TJ (MSMg01no124_f23.g1)
ACCAG333743AG333744
length1,2001,237
length of high quality
(start - end)
505 (94 - 598)199 (187 - 385)
definitionCHROMAT_FILE: MSMg01no124_f23.b1 PHD_FILE: MSMg01no124_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:23 2005CHROMAT_FILE: MSMg01no124_f23.g1 PHD_FILE: MSMg01no124_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAGGGAGAGGACCGCGGAATTCTTTGCCTTCTTTAGACCTTTAAAGCCCC
ACTAAAATTCTGCCGTGTTTCTGCAGACCCTTTAAAAGCTTTTATGCATA
TGATCTTTCTGAGAAAATTAATTTGGAGGAATGATTAAAAATTGACAAGA
TCCACATATATTGCTATCTAAATAAGAGATTTATTAAATAGTTTTAAAAC
AAATGTGCATGATGTAAGCCATTTTCAAAATACGCATAATTTTACTTTGA
CTTATATAATATTAAAATTAGCAAACTTTCATCTTGAATTTTAAATATTT
GTATTTAGCTGGCATATATTAAATAGTATAGGCAGAAATCCAGTTAATTA
AAACTTCAATTTGCTGCTGTTGCTAAAATACCTGAGCTCTTTTTCTTTTG
AAAATAGACAATAAATTTGTTAATTTGAAGACTTTTAGTACAGCTTGCTT
TGGTATAGTACTTGAATTGCTAATCAATAAACATGTGTTAATAACATAGT
GCTGGTCCTGTGGAATCATCTGGGTAGAAAACAGTTATAGCATCTCCAGG
GCTACATGTGGTTTTGGTTCAAGGTGGCATGTTCTTTGTTGAACTGTTGG
GCTAAGATAGTGTTCACAAAGGAGTAATGTGTGTTAGGGCGTGTCTCTCT
TACTGCTCTTTTTCCTGTAAACTTCTGCCCTTCGCCCTTAACATATATGG
TCTGACATTTCCATTCATAGTCAGACCCAGTAGCACAATGCCTTACAGAT
CCTTGGAAAAGCTTAAGTAAACTGTAAACCAAAGATCACTATATAGATGT
CCGTCCTTAAACATCTATAGTTAGTAACCCCTTTCCCCAATGTAGAAATA
GCTTACTTCTAAGTACCCAATTTTGGCTTTTATTTTTTACACCAATTATT
TTTTAATTTAATAACTTCTTTAACGCCTAGTCGACCTACCCTTAACCGTA
ACGCAACTTTTGCCCCCGGCCCCCAAATTCCTATCCCTCCATCATTTCTT
AAAATCCAATGGCCTGGGAAAACTCTTTTGGTGGGAAAACCATTTAGTAC
TTTAGCCTTTGTAAGCGTCATTCTTCATTATGTCGCCCCTCGTCCCTTCC
TAACTCTGTAATCCCCGTATGATTTATCTTTTATTTTTTCAAGGTCTCCC
TCTCGGCTCTTTATCAAACATGTTCCCATTCCCAGCACATAACCCTTACG

CCACGGTAGTCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCTTTTAACCTGAGGAATACTGAATGGCAGAGAAGNACCTGC
CTTTAAGAAACCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCCCAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGTATTTTTGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAACCTGTGTTTTTA
ATCCACATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAC
CCCAAAATCTATGATACCCAAGATATAAGATACAATTTGCTAAACACATG
AAACTCAAGAAAAATGAATACTGAAGTGTGAACACTATGCCCCCTCCCTT
ACAATGGGTAACTAAACACCCCTTGTAAGGAGTTACATACACAAAGTTTG
CGACTGAGATGAAAGGATGCTCCATGTATAAGACTTTCATATCCCAGGGA
TCCCCCCCATAATTCAGTTTCTCAAACGCTTAACACCATTGGATTATATT
AATACAGAATTTTTTCGCAACGTACCCAAAATGTACCTTGTCCTCTTGGA
GAAACTATTCCCTTCGGCCTATCAAATAATCCTAAAGTGTAAGGCTCCTC
GCTCCTCTTAATGGCATGGATCCTCCCGGCCTTCCCAATGTGATGCAATC
TATAAAACAGTTCCTCCACTTAATTCTAAATGGTATTTTGTTTCCCTTAA
AGGTCGGAACAAATTTTTTATCAAATTAACCCTTGTACCTCCTGAACTTC
TTTGTACTTCTATTTTTCCATTCTTATATCACAAAAAGGTTCCTATATCT
TTATCTCTTTCTTGGTAAAAATAATATGCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_f23.b1 MSMg01no124_f23.b1 CHROMAT_FILE:
MSMg01no124_f23.b1 PHD_FILE: MSMg01no124_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:23 2005
         (505 letters)



>mm_chr4_99505545_99506451
          Length = 907

 Score =  930 bits (481), Expect = 0.0
 Identities = 500/507 (98%), Gaps = 2/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatatgatctttctgagaaaattaatttggaggaatgattaaaaattgacaagatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 201 atgcatatgatctttctgagaaaattaatttggaggaatgattaaaaattgacaagatta 260

                                                                       
Query: 61  acatatattgctatctaaataagagatttattaaatagttttaaaacaaatgtgcatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatattgctatctaaataagagatttattaaatagttttaaaacaaatgtgcatgat 320

                                                                       
Query: 121 gtaagccattttcaaaatacgcataattttactttgacttatataatattaaaattagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagccattttcaaaatacgcataattttactttgacttatataatattaaaattagca 380

                                                                       
Query: 181 aactttcatcttgaattttaaatatttgtatttagctggcatatattaaatagtataggc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aactttcatcttgaattttaaatatttgtatttagttggcatatattaaatagtataggc 440

                                                                       
Query: 241 agaaatccagttaattaaaacttcaatttgctgctgttgctaaaatacctgagctctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaatccagttaattaaaacttcaatttgctgctgttgctaaaatacctgagctctttt 500

                                                                       
Query: 301 tcttttgaaaatagacaataaatttgttaatttgaagacttttagtacagcttgctttgg 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 tcttttgaaaatagacaataaatttgttaagttgaagacttttagtacagcttgctttgg 560

                                                                       
Query: 361 tatagtacttgaattgctaatcaataaacatgtgttaataacatagtgctggtcctgtgg 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tatagtacttgaattgctaatcaattaacatgtgttaataacatagtgctggtcctgtgg 620

                                                                       
Query: 421 aatcatctgggtagaaaacag--ttatagcatctccagggctacatgtggttttggttca 478
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatcatctgggtagaaaacagagttatagcatctccagggctacatgtggttttggttca 680

                                      
Query: 479 aggtggcatgttctttgttgaactgtt 505
           |||||||||||||||||||||||||||
Sbjct: 681 aggtggcatgttctttgttgaactgtt 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 907
Length adjustment: 10
Effective length of query: 495
Effective length of database: 897
Effective search space:   444015
Effective search space used:   444015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)