BAC Information

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BAC

Clone NameMSMg01-125J12
Chromosome4 (Build37)
Map Location 20,072,965 - 20,073,504
singlet/doubletsinglet
Overlap genenone
Upstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream geneE130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125J12.T7 (MSMg01no125_j12.b1)MSMg01-125J12.TJ (MSMg01no125_j12.g1)
ACCAG334639AG334640
length715696
length of high quality
(start - end)
542 (42 - 583)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no125_j12.b1 PHD_FILE: MSMg01no125_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:41 2005CHROMAT_FILE: MSMg01no125_j12.g1 PHD_FILE: MSMg01no125_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATAATTTGCGGCGCTATACGACTCCTATTTCGAGAGGACCGCGGAATTC
CCATATTTCTCCATCTTGTTTAGTTTAGAGTTATATGAGAATTTGTAAAA
ATCCCAACAATGCATTCTTGTTCCCATGGAGAGTGCTGGGACCTGATAGA
ACCTGCATTGCACTTGAGATCTGTTTTCTCAGTTGGAAAGGTTAGCTGAC
TTGTAGGGTAGAAAATTATCAGTCAGTCATAGTTTGATGCTTAGAGGTTC
TATCTTCTATGAATGGCTTTATTTTTAGAAAGGTACACTTCCCCTTGTAA
ACTCTGCTCAAGAAAATCATAACAAAACAAAACTCGTTTGAGGAAGAATT
TGTGGCTTCAACTCACTTATGGGATCTGTTTAGGCTCTCTGTATACTGCT
GCTGGGGAGGGGGAGGGAGTGTAGAACCTGTCCGAATGCCCATGAGATGG
TGTCATTCATCTTTCCTTTAAGTTCTGATTGGCATTGATATTTGTCCCTG
TTCTTTATTTTTTCCAGTAGCATGGACTTCGAAGGGGCGAGATTTCTCAT
TTCTTCATATTTTAAGTCACTCCACAGATGTTTTGCAGATGAATATGCCC
TTTTTTTTGTGTGTGATACACACACAGCGATTTTTATTCTTTTTTTTTGC
CTTGCTTTTTTTCGTTTGTTTTTATTAGGCATTTTCCTCATTTACCTTTC
CAATGCTTATCCCAA
CCCATTATAGTGGTAGGCCTGGCGGCCGCCTTTTCAAAGAATGGAGGTGA
ACTATAGAATTGCTCGCGGAATTCTGTATATTGAACTATCCCCGCATCCC
TGGGATGAAGCCTACTTGATCCTGGTAAATGATTGTTTTGATGTGCTCAT
GGATTCAGTTTGTGAGAAAAATTTTTTAAGTATTTTTACACTGATATGCA
TAAGCAAATTTGGTCTGAAGCTCTCTCTTTCTTCTATCTTTGTGTGGTTT
AGTTATCAGCATAGCTGTGGTGTCATAGAATGAATTAGTGTTCCTTCTCT
TGCTGTTTTGTGGAATATTTTAAGAAGTATTGGTATTAGGTGTTCTTTAA
AGGTCTCATTGAATTCTGCACTAAACCCATCTGGCCCTGAGATTTTTTTT
GGCGACTGGAGATTGCAACACTTTTACTGACTGCTTCTATTTCCTTGGGA
GTTACAGGACTGTTTTGAGGTTTAGCTGATACTGATTTAACTTTGGTACC
TGGTATCTGTCTAGAAAATCGTCCACTTCTCCTAGAGTTTCTAGTTCTGT
TGAGTATAGCCTTTTGTAATAGGATCTGATTATTTTTTTTTAATTTCCTC
ACCTTTCGTTGTTATGTCTCCCTTTTCAGTACTGACTTTTGTTAATTTGG
ATACTGTCTCTGTGCCCTTAAGCTCCTTTGTCTAAAAGTTTGTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_j12.b1 MSMg01no125_j12.b1 CHROMAT_FILE:
MSMg01no125_j12.b1 PHD_FILE: MSMg01no125_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:41 2005
         (542 letters)



>mm_chr4_20072762_20073704
          Length = 943

 Score =  984 bits (509), Expect = 0.0
 Identities = 532/543 (97%), Gaps = 7/543 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcccatatttctcca----tcttgtttagtttagagttatatgagaatttgtaaaa 59
           |||||||||||||||   |    |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcccatatttc---agaaatcttgtttagtttagagttatatgagaatttgtaaaa 260

                                                                       
Query: 60  atcccaacaatgcattcttgttcccatggagagtgctgggacctgatagaacctgcattg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcccaacaatgcattcttgttcccatggagagtgctgggacctgatagaacctgcattg 320

                                                                       
Query: 120 cacttgagatctgttttctcagttggaaaggttagctgacttgtagggtagaaaattatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttgagatctgttttctcagttggaaaggttagctgacttgtagggtagaaaattatc 380

                                                                       
Query: 180 agtcagtcatagtttgatgcttagaggttctatcttctatgaatggctttatttttagaa 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcagtcatagtttgatgcctagaggttctatcttctatgaatggctttatttttagaa 440

                                                                       
Query: 240 aggtacacttccccttgtaaactctgctcaagaaaatcataacaaaacaaaactcgtttg 299
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 441 aggtacacttccccttgtaaactctgctcaagaaaaacaaaacaaaacaaaactcgtttg 500

                                                                       
Query: 300 aggaagaatttgtggcttcaactcacttatgggatctgtttaggctctctgtatactgct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaagaatttgtggcttcaactcacttatgggatctgtttaggctctctgtatactgct 560

                                                                       
Query: 360 gctggggagggggagggagtgtagaacctgtccgaatgcccatgagatggtgtcattcat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggggagggggagggagtgtagaacctgtccgaatgcccatgagatggtgtcattcat 620

                                                                       
Query: 420 ctttcctttaagttctgattggcattgatatttgtccctgttctttattttttccagtag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcctttaagttctgattggcattgatatttgtccctgttctttattttttccagtag 680

                                                                       
Query: 480 catggacttcgaaggggcgagatttctcatttcttcatattttaagtcactccacagatg 539
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catggacttcgaaggggtgagatttctcatttcttcatattttaagtcactccacagatg 740

              
Query: 540 ttt 542
           |||
Sbjct: 741 ttt 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space:   496356
Effective search space used:   496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)