BAC Information

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BAC

Clone NameMSMg01-125P20
Chromosome4 (Build37)
Map Location 37,305,854 - 37,306,127
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125P20.T7 (MSMg01no125_p20.b1)MSMg01-125P20.TJ (MSMg01no125_p20.g1)
ACCAG334928AG334929
length726704
length of high quality
(start - end)
279 (70 - 348)420 (189 - 608)
definitionCHROMAT_FILE: MSMg01no125_p20.b1 PHD_FILE: MSMg01no125_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:12 2005CHROMAT_FILE: MSMg01no125_p20.g1 PHD_FILE: MSMg01no125_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAAT
TCATCTCATTGTTACCCGAAAATATACCACCAACTAATAACTACATTGTC
TATTTATTTATTCAAGAATAAAACCTATTTTACTAGTGACTATTGAGAGT
TGATGTGAGATTAATCCTGAAACAATTTGTTCAGAATAAATATTTGTATT
TTAATTCTTTGCTAATTTCTTCTCTTCTCTAAATCATAGGAGGAAGGTGT
TTTAAGGTTCTTTACTTCTTTTCAAGAATTATTATAATTAATCCATTTAC
AATATGATTTTCTTTAAACTATAACAAAAATAAAGTGAAAATTAATCCTC
TTGAACATTTGTAGAACGCTGATTGTGGCTTTCTTGGAATTGGATGGAGA
GAATTAGTCATGCAAGCCAGGAAAGCAATCTTGCAAATGCTCTTGTGAAT
CTTTGGAGGTCTTGAACATGATTGCTATGACAGTTTTACTGCCATGTACA
CAGCTCCACACTCATCACATTCTTTCTCCACATATGTTATTTGACATAGG
CGAACGCCGATGACCCACATACACACCATACTACCTCTATGGATGCCCAT
TCCTCCCCCTGCCCCCACTCAAACTCACACTAATGTGCAAGCTTTCCCCC
TTGCTGCCATCACATGTCTCGGATTCAACTGACTCCTCCACCCCCACTAG
CAAACACCCTACCCCAATCTTACTGC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTACGCCCCCCCCCCTT
TTGATATGGTTATTTGGGTTTTTTGGTGATTAACTTCTTGAGTTTTTTTT
TTTAATATATATTTTAGGATATTAGCCCGTNTGGTTGGTGGAGTTAGTGA
AGGTTTTTCCCCAATCTGTATGTTCCCAATTTGTCTTATTGACTATGTCC
TTTGCCTTACAGAAACTTTCCAGTTTCATGAGGTCCCATTAATCAATTCT
TGATCTTAGAGCATGAGTCATTAGAATTCTATTTATGAAAATTCTGACTG
AGCCAATGAGTTTCAGGCCTTTTCACACTTTCTCTTCTATTAGATTTGGT
GTATCTTGTTTTATGTTAAGGTCCTTGACCCAATTGGACTTGAGCTTTGT
ACAAGTTGACAAATATGGGTCTATTTTCATTCTGCTACATACAGACAGCC
AGTTAGACCAGCAACATTTATTGGAGATGCTTTCTTTTTTATATTGCCTA
TTTTTGGCGTCTTTGTAAATGATGAATTGTGTGTAAGTGTATGGTTTTAT
TTCTGGGGCTTCAATTCTATTTCAATGATCAGTGCTTCTGTGTCTGTATG
GATACCACACAGATTTTATCACTATTGCTCTGTAGTAATTTGTGAGGTCA
ATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_p20.b1 MSMg01no125_p20.b1 CHROMAT_FILE:
MSMg01no125_p20.b1 PHD_FILE: MSMg01no125_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:12 2005
         (279 letters)



>mm_chr4_37305654_37306327
          Length = 674

 Score =  501 bits (259), Expect = e-146
 Identities = 272/279 (97%), Gaps = 5/279 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatataccaccaactaataactacattgtctatttatttattcaagaataaaacctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatataccaccaactaataactacattgtctatttatttattcaagaataaaacctatt 260

                                                                       
Query: 61  ttactagtgactattgagagttgatgtgagattaatcctgaaacaatttgttcagaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactagtgactattgagagttgatgtgagattaatcctgaaacaatttgttcagaataa 320

                                                                       
Query: 121 atatttgtattttaattctttgctaatttcttctcttctctaaatcataggaggaaggtg 180
           ||||| ||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct: 321 atattagtattttaattctttgctaatttcttctct-----aaatcataggaggaaggtg 375

                                                                       
Query: 181 ttttaaggttctttacttcttttcaagaattattataattaatccatttacaatatgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttttaaggttctttacttcttttcaagaattattataattaatccatttacaatatgatt 435

                                                  
Query: 241 ttctttaaactataacaaaaataaagtgaaaattaatcc 279
           ||||||||||||||| |||||||||||||||||||||||
Sbjct: 436 ttctttaaactataagaaaaataaagtgaaaattaatcc 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 674
Length adjustment: 9
Effective length of query: 270
Effective length of database: 665
Effective search space:   179550
Effective search space used:   179550
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)