BAC Information

Click to search

BAC

Clone NameMSMg01-126F08
Chromosome4 (Build37)
Map Location 154,376,987 - 154,505,898
singlet/doubletdoublet
Overlap genePlch2, Pex10, Rer1, Morn1
Upstream geneBC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358
Downstream geneSki, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126F08.T7 (MSMg01no126_f08.b1)MSMg01-126F08.TJ (MSMg01no126_f08.g1)
ACCAG335177AG335178
length701707
length of high quality
(start - end)
367 (44 - 410)560 (76 - 635)
definitionCHROMAT_FILE: MSMg01no126_f08.b1 PHD_FILE: MSMg01no126_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:40 2005CHROMAT_FILE: MSMg01no126_f08.g1 PHD_FILE: MSMg01no126_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,376,987 - 154,377,350)(154,505,341 - 154,505,898)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXATATTCAGAGAATCCGCGGAAT
TCCTCAAAGCCTACCGTCCCCTGATGGTCATCTGTGTCCGCCTCCTGTGA
CACCCAACCTGGGATCACCATCCGTGCTGCAACCTTACTACTCCCAGTGT
CAAGCCCAGCTTCCCTTCCTCTGCCACTACCCACAGCACCCCTCCAACGG
CCCCTCTCTCTTCTCCCACCAGAAAAGCACTGTGGCCATTGAAAGCACAG
ATCGGAGCCACCGCTCCCTTACACCACGCCTTGCAAGGCCAACCGGTAAC
CAAACCCCATGGTCACCTACACTGTAGTTACCAACACCCTGCCTTGTGAG
GTGAAGTCTCCCACTGGAGCTCCTTCCACCTTGGGCTCTGTGCCTACATC
TGCAGCCACAGTTGGCCACCTGCCCTCTGACAAGAGACACTTGGGGCCCC
AGAGGGCCCAGCAGTGTCCTGTCTCAGGTATCCAGAGACGTGCTCTTGCT
CACTATCTTCATTTTTACAGAGAAAAGGACTCATAAGATACCCCCCCAGA
AACTGTTCCACAGGAAGTCCAAGGAAAGCCTTGATGTCTTCCCCAACTTT
TACGACGTAAGGAGCATCTTACACGGGCGCCATTACCCAGGATGCTAGGG
TAACCCCAGGTTCCATCCCTGGTAAATACCCTAAAACAAAGGGGGCCAGG
T
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGTACTGGGGGAGGGGAAGCA
CTGCAGGTCTGGTCTGAGTCTTTTTGACTCCAAGCTCAGACCTCAGGAGT
CCAGCAGAGGCTCACCAGCCAGGCTCCTTATACAGAGCGGCAGCTGGTGG
CCTTCACTCTTCCCCGTACCTAGCCTGAGGCCCTCAAGGATGCCCTACTT
AGGTGAGGGGATCAGGCCAGAAGGACACCCCCATGAGGCTACTGGGCTCT
TCAGTGCAAACCAAGATATTGGAGCCCTCCTAGATTGCAGGGCTAGGCAA
TGCTTCTGGAAAAGACAGGTGTCCTAGAATCCTGGAAGGTCAAAGGACTT
AAGGACCTGATAACTGAACAACAGGAGGAGGATGGAATCCTTTGATTGCC
ACAGGTCCTGGGGACAAAGTGGGGACAGACCCTGCCCAAGGCTCCCACAT
TCTTTCTAGGGAAAGGGACAAACTCTCACAGGAGATTTGAGGTAGTTAGG
GGACAGAACTGAGGAGCCCTGGACAATGCCTTGAGGTGAGCATTCCTAGA
AGACAGCATTTGCATGGTAAGGGTGGCCAAGTCCGAAGAGACAAGAGACC
TCATGGCCCCGAGAACATGGTACTGAGGTGGCTGGGGAGCTTCATGAGGC
TAAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_f08.b1 MSMg01no126_f08.b1 CHROMAT_FILE:
MSMg01no126_f08.b1 PHD_FILE: MSMg01no126_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:40 2005
         (367 letters)



>mm_chr4_154376784_154377550
          Length = 767

 Score =  658 bits (340), Expect = 0.0
 Identities = 358/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctcaaagcctaccgtcccctgatggtcatctgtgtccgcctcctgtgacaccca 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctcaaagcctaatgtcccctgatggtcatctgtgtccgcctcctgtgacaccca 263

                                                                       
Query: 64  acctgggatcaccatccgtgctgcaaccttactactcccagtgtcaagcccagcttccct 123
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acctggggtcaccatccgtgctgcaaccttactactcccagtgtcaagcccagcttccct 323

                                                                       
Query: 124 tcctctgccactacccacagcacccctccaacggcccctctctcttctcccaccagaaaa 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 tcctctgccactacccacagcacccctccaacagcccctctctcttctcccaccagaaaa 383

                                                                       
Query: 184 gcactgtggccattgaaagcacagatcggagccaccgctcccttacaccacgccttgcaa 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcactgtggcccttgaaagcacagatcggagccaccgctcccttacaccacgccttgcaa 443

                                                                       
Query: 244 ggccaaccggtaaccaaaccccatggtcacctacactgtagttaccaacaccctgccttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggccaaccggtaaccaaaccccatggtcacctacactgtagttaccaacaccctgccttg 503

                                                                       
Query: 304 tgaggtgaagtctcccactggagctccttccaccttgggctctgtgcctacatctgcagc 363
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaggtgaagtcttccactggagctccttccaccttgggctctgtgcctacatctgcagc 563

               
Query: 364 caca 367
           ||||
Sbjct: 564 caca 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no126_f08.g1 MSMg01no126_f08.g1 CHROMAT_FILE:
MSMg01no126_f08.g1 PHD_FILE: MSMg01no126_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:41 2005
         (560 letters)



>mm_chr4_154505141_154506100
          Length = 960

 Score = 1071 bits (554), Expect = 0.0
 Identities = 557/558 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgagtactgggggaggggaagcactgcaggtctggtctgagtctttttgactccaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tctgagtactgggggaggggaagcactgcaggtctggtctgagtctttttgactccaagc 699

                                                                       
Query: 61  tcagacctcaggagtccagcagaggctcaccagccaggctccttatacagagcggcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tcagacctcaggagtccagcagaggctcaccagccaggctccttatacagagcggcagct 639

                                                                       
Query: 121 ggtggccttcactcttccccgtacctagcctgaggccctcaaggatgccctacttaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggtggccttcactcttccccgtacctagcctgaggccctcaaggatgccctacttaggtg 579

                                                                       
Query: 181 aggggatcaggccagaaggacacccccatgaggctactgggctcttcagtgcaaaccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aggggatcaggccagaaggacacccccatgaggctactgggctcttcagtgcaaaccaag 519

                                                                       
Query: 241 atattggagccctcctagattgcagggctaggcaatgcttctggaaaagacaggtgtcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atattggagccctcctagattgcagggctaggcaatgcttctggaaaagacaggtgtcct 459

                                                                       
Query: 301 agaatcctggaaggtcaaaggacttaaggacctgataactgaacaacaggaggaggatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agaatcctggaaggtcaaaggacttaaggacctgataactgaacaacaggaggaggatgg 399

                                                                       
Query: 361 aatcctttgattgccacaggtcctggggacaaagtggggacagaccctgcccaaggctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aatcctttgattgccacaggtcctggggacaaagtggggacagaccctgcccaaggctcc 339

                                                                       
Query: 421 cacattctttctagggaaagggacaaactctcacaggagatttgaggtagttaggggaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 338 cacattctttctagggaaagggacaaactctcacaggagatttgaggtatttaggggaca 279

                                                                       
Query: 481 gaactgaggagccctggacaatgccttgaggtgagcattcctagaagacagcatttgcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gaactgaggagccctggacaatgccttgaggtgagcattcctagaagacagcatttgcat 219

                             
Query: 541 ggtaagggtggccaagtc 558
           ||||||||||||||||||
Sbjct: 218 ggtaagggtggccaagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)