Query= MSMg01no127_l23.b1 MSMg01no127_l23.b1 CHROMAT_FILE:
MSMg01no127_l23.b1 PHD_FILE: MSMg01no127_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:36 2005
(564 letters)
>mm_chr4_130453339_130454302
Length = 964
Score = 1021 bits (528), Expect = 0.0
Identities = 552/560 (98%)
Strand = Plus / Plus
Query: 5 gaattcctgcctcctgctgcagctgttaatttatgttaatcagatgcttgaaaccccaag 64
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtctcctgctgtagctgttaatttatgttaatcagatgcttgaaaccccaag 264
Query: 65 tcccctggatacctgggtctagggaggatggagctggctggagagaggatgaagtggcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccctggatacctgggtctagggaggatggagctggctggagagaggatgaagtggcct 324
Query: 125 tgtgtttctgaggtggctctgctggcctttacctgggccccacagcatgggttctgtttc 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtttctgaggtggctctgttggcctttacctgggccccacagcatgggttctgtttc 384
Query: 185 ccatgaaccttagctgtgtgaggccatgagaggggggctctttcctggtgcccagatact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatgaaccttagctgtgtgaggccatgagaggggggctctttcctggtgcccagatact 444
Query: 245 gaggaagagtgaggggctgctctgttgtctggtaggaaaggtgaccagctaaaagccagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 gaggaagagtgaggggctgctctgttgtctggtaggaaaggtgaccagctaaaggccagg 504
Query: 305 tcataagtcatgggccctcatgagtccacagactttcctccctggacacctcaggggcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcataagtcatgggccctcatgagtccacagactttcctccctggacacctcaggggcac 564
Query: 365 agaaaagaaaacgaaccccttgtgggcagcttccatgacaggtagctggggctcagcgcc 424
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaaagaaaaggaagcccttgtgggcagcttccatgacaggtagctggggctcagcgcc 624
Query: 425 tgcacttgcctcttagctgctggggaacaaagtgtcttaacctctgtgcctcaatctcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 tgcacttgcctcttagctgctggggaacaaagtgtcttaacctctgtgcctcagtctcct 684
Query: 485 cacaggaactggggacactgagtgcttcctgccacaggatttgggataccgaaggatgtg 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacaggaactggggacactaagtgcttcctgccacaggatttgggataccgaaggatgtg 744
Query: 545 ccccatgtggggaagggaca 564
||||||||||||||||||||
Sbjct: 745 ccccatgtggggaagggaca 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_l23.g1 MSMg01no127_l23.g1 CHROMAT_FILE:
MSMg01no127_l23.g1 PHD_FILE: MSMg01no127_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:36 2005
(473 letters)
>mm_chr4_130624466_130625338
Length = 873
Score = 549 bits (284), Expect = e-160
Identities = 309/318 (97%), Gaps = 3/318 (0%)
Strand = Plus / Minus
Query: 159 ctccaaaggctaccatccagagagcc-aaagcacagtccacagaa--ggggggggggagc 215
|||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct: 873 ctccaaaggctaccatcctgagagccaaaagcacagtccacagaaggggggggggggagt 814
Query: 216 gcacagatctgttggagaagaagtttatatcttaaagtaaagaaggcttggcgcaccgac 275
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gcacagatctgttggagaaggagtttatatcttaaagtaaagaaggcttggcgcaccgac 754
Query: 276 tgaaagacaaacaagctgtcttaaaccaggcaatggatctgaagagacatttctccaccg 335
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cgaaagacaaacaagctgtcttaaaccaggcaatggatctgaagagacatttctccaccg 694
Query: 336 agaagatatcaacggccagtgtgtggtggtgagggaggctccacggcttttgtcactaca 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 agaagatatcaacggccagtgtgtggtggtgagggaggctccacggcttttgtcactaca 634
Query: 396 gaagcacgtagcaaagctgcctccagagttctgcagagagtagccagggcggagagtggg 455
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaagcacatagcaaagctgcctccagagttctgcagagagtagccagggcggagagtggg 574
Query: 456 gaaagttggggaaggcaa 473
|| |||||||||||||||
Sbjct: 573 gagagttggggaaggcaa 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
