Query= MSMg01no128_c03.b1 MSMg01no128_c03.b1 CHROMAT_FILE:
MSMg01no128_c03.b1 PHD_FILE: MSMg01no128_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:07 2005
(592 letters)
>mm_chr4_26965698_26966689
Length = 992
Score = 1044 bits (540), Expect = 0.0
Identities = 579/592 (97%)
Strand = Plus / Minus
Query: 1 tctgtattttttaggtgatactagcctgaataaagctgacaagtaatgctatgtagaaga 60
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 792 tctgtattttttaggtgatactagcctgaataaagttgataagtaatgctatgtagaaga 733
Query: 61 aaatcctttactctgaatcttctggggctgagataatacaaattttaaatgcagcattct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gaatcctttactctgaatcttctggggctgagataatacaaattttaaatgcagcattct 673
Query: 121 gagtgtctaatctaatttataaatatcatattttccaaaatctcattcaaatttaatgtt 180
|| |||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 672 gaatgtctaatataatttataaatatcatattttccaaaatctcactcaaatttaacatt 613
Query: 181 catactcatgttcttgcagactgagtttttaaattccccatttctcctgttcttatattc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 catactcatgttctttcagactgagtttttaaattccccatttctcctgttcttatattc 553
Query: 241 atcatattgatgggtgtcatatcaaatgttttcacagccctggtcagctatacttaatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atcatattgatgggtgtcatatcaaatgttttcacagccctggtcagctatacttaatgc 493
Query: 301 agacagttatttatactccaaaatagtactcttgattttctgtactcctactgagtgaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agacagttatttatactccaaaatagtactcttgattttctgtactcctactgagtgaga 433
Query: 361 aacaagtcttttctagaacatcatgtaggaaattaaataacaaatttaaactatgtagct 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 432 aacaagtcttttctagaacatcatgtaggaaattaaataacaaattcaaactatgtagct 373
Query: 421 tcacctgtaatactacaattagtgaatatactgtcctcttctcttgcctcattccactga 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcacctgtaatactacaattagtaaatatactgtcctcttctcttgcctcattccactga 313
Query: 481 gcaaccaccaatactgaaacacacccaaagaagcaaggctctcatttgatataggatcac 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 gcaaccaccaatactgaaacacacacaaagaagcaaggctctcatttgatataggatcac 253
Query: 541 ccagagcaattcctacatagaggattatcttaaatctagttatctgcatcag 592
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctagagcaattcctacatagaggattatcttaaatctagttatctgcatcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_c03.g1 MSMg01no128_c03.g1 CHROMAT_FILE:
MSMg01no128_c03.g1 PHD_FILE: MSMg01no128_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:07 2005
(572 letters)
>mm_chr4_26819443_26820415
Length = 973
Score = 1065 bits (551), Expect = 0.0
Identities = 566/571 (99%), Gaps = 1/571 (0%)
Strand = Plus / Plus
Query: 1 cctttcactattgttttacttattaaacttaatatatatttgaatacttacatttactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttcactattgttttacttattaaacttaatatatatttgaatacttacatttactga 260
Query: 61 ctgcaaagaatgagcaa-ttcattatgaaatactatactcctatactcatgaggaagtag 119
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ctgcaaagaatgagcaaattcattatgaaatactatactcctatactcatcaggaagtag 320
Query: 120 atgattactctctatagtcattactagtggatgtaatttttttctgtttgtttctttcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgattactctctatagtcattactagtggatgtaatttttttctgtttgtttctttcag 380
Query: 180 aattttagctaagcttcaactgtcagtggagaagagcttctctgtgtttactgagagaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattttagctaagcttcaactgtcagtggagaagagcttctctgtgtttactgagagaca 440
Query: 240 aatgctttcccataataagagaagtttccctatttatctagaaaattaccctctatatac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgctttcccataataagagaagtttccctatttatctagaaaattaccctctatatac 500
Query: 300 agaatcatttccctgtctagagaaaagccttcttctgtatgtctagagatgaacctttgt 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agaatcatttccctgtctagagaaaagtcttcttctgtatgtctagagatgaacctttgt 560
Query: 360 cttccaaatagagaatttctgtgtctgtccaaaggtcttctttttattcagaaaaggact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttccaaatagagaatttctgtgtctgtccaaaggtcttctttttattcagaaaaggact 620
Query: 420 ttcctttatcaagcaactaatacaaacaaggaaagactattatataattttcaaactaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcctttatcaagcaactaatacaaacaaggaaagactattatataattttcaaactaca 680
Query: 480 taattttggaaagtgtgaaaaataagtgatcaatcttaaaatcatatacatacaagaaat 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 taattttggaaagtgtgaaaaataagtgatcaatcttaaaatcatatacataaaagaaat 740
Query: 540 ctaatatggaataaatattctatacgtatac 570
|||||||||||||||||||||||| ||||||
Sbjct: 741 ctaatatggaataaatattctatatgtatac 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
