BAC Information

Click to search

BAC

Clone NameMSMg01-128L02
Chromosome4 (Build37)
Map Location 77,687,788 - 77,688,193
singlet/doubletsinglet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L02.T7 (MSMg01no128_l02.b1)MSMg01-128L02.TJ (MSMg01no128_l02.g1)
ACCAG336895AG336896
length731729
length of high quality
(start - end)
413 (46 - 458)394 (76 - 469)
definitionCHROMAT_FILE: MSMg01no128_l02.b1 PHD_FILE: MSMg01no128_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:52 2005CHROMAT_FILE: MSMg01no128_l02.g1 PHD_FILE: MSMg01no128_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAAAGCCTTCAATTTCTTTCTTTTTTTTTCTTCTTTCCCTCAA
CAGTCATTGAATAGAAAGTTGTTCAGTTTACTAGTGTATAGTCGCAAAGT
TAAAGACAAAACTTTATCCAGTGGTGAGCCATGTAAAATAACCCCAGAAT
AAGTATTTTACAGAAACAAACCATGATTGAGTCAGGACCAAGACCACTGT
CTCATACAAATTGAGCATGTAAACATGATGGGATGGTTGGGTTTAGCCAT
TTTTTAAAAAATATTTATTAGGTATTTTCCTCATTTACATTTCCAATGCT
ATCCCAAAAGTCCCCCATACCCACCCCCTACTCCCCTACCCACCCACTCC
CCCTTTTAGCCATTAAAGAGCACAAGCACACATAGTTAAGTAGTTTAAGC
TGTGCTTGCGCGGTATGTTGATGTGTTACAAGCATGTCCTCATGTCATAG
CCCTTAGTACATGGATATGTACAACCGGTACTCCTTGTGATCATTGCTTT
CCTAGGTCTCATGATCTCAATCATGCCCTCTGACCCTTCTTAGCTAGAAG
GTATTTCCCATGCATTATGCCACCCTACAGTCCTCAAAGCCACTCAAGTG
ATACTCACAATGTTGGTTGCTTCCTATACTGGATGTATCTTTGTATGCTC
TACTTTATGAAAATACACACCTTATATCCTN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACCGAATGACTG
AGAAGCACGTGAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCAAAAAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
TACTCCTCCATTGTTGGTGGGATTGTAAGCTTGTACAACCACTCTGGAAA
TCAGTGTGGTGGTTCCTAGAAAATTGGACATAGTACTACCGGAGGATCCT
GCAATACCTCTCCTGGGCATATATCCAGAAAATGTTCCAACTGGTAAGAT
GGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATG
TGGCACATTTACACAACGGAGTACTATTCAGCTATTAAAAAGAATGAACT
TATGAAATTCCTAGAGGGCATCATCCTGAGTGAGGTAATTCAATCATAAA
ACAACTCACATGACATGTACTCACTGCTAAGTGGACATTAGCCCAGAAAC
TTATAATATCCCAGATACACAGTTATGCTTATATCCACAGCTATGCGTAG
TTCTCTCTGCTTATGAAACGTTCACTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l02.b1 MSMg01no128_l02.b1 CHROMAT_FILE:
MSMg01no128_l02.b1 PHD_FILE: MSMg01no128_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:52 2005
         (413 letters)



>mm_chr4_77687651_77688463
          Length = 813

 Score =  729 bits (377), Expect = 0.0
 Identities = 400/409 (97%), Gaps = 3/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagaaagccttcaatttctttctttttttttcttctttccctcaacagtcattg 64
           ||||||||||||||||||||||||    |||||||||||| |||||||||||||||||||
Sbjct: 543 gaattctagaaagccttcaatttc---atttttttttcttttttccctcaacagtcattg 487

                                                                       
Query: 65  aatagaaagttgttcagtttactagtgtatagtcgcaaagttaaagacaaaactttatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aatagaaagttgttcagtttactagtgtatagtcgcaaagttaaagacaaaactttatcc 427

                                                                       
Query: 125 agtggtgagccatgtaaaataaccccagaataagtattttacagaaacaaaccatgattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agtggtgagccatgtaaaataaccccagaataagtattttacagaaacaaaccatgattg 367

                                                                       
Query: 185 agtcaggaccaagaccactgtctcatacaaattgagcatgtaaacatgatgggatggttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agtcaggaccaagaccactgtctcatacaaattgagcatgtaaacatgatgggatggttg 307

                                                                       
Query: 245 ggtttagccattttttaaaaaatatttattaggtattttcctcatttacatttccaatgc 304
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 306 ggtttagccatttttttaaaaatatttattaggtattttccccatttacatttccaatgc 247

                                                                       
Query: 305 tatcccaaaagtcccccatacccaccccctactcccctacccacccactcccccttttag 364
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 246 tatcccaaaagtcccccatacccaccccccacgcccctacccacccactcccccttttag 187

                                                            
Query: 365 ccattaaagagcacaagcacacatagttaagtagtttaagctgtgcttg 413
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccattaaagagcacaagcacacatagttaagtagtttaagctgtgcttg 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)