BAC Information

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BAC

Clone NameMSMg01-128P08
Chromosome4 (Build37)
Map Location 45,640,600 - 45,640,812
singlet/doubletsinglet
Overlap genenone
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140
Downstream geneLOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128P08.T7 (MSMg01no128_p08.b1)MSMg01-128P08.TJ (MSMg01no128_p08.g1)
ACCAG337096AG337097
length723710
length of high quality
(start - end)
86 (113 - 198)213 (57 - 269)
definitionCHROMAT_FILE: MSMg01no128_p08.b1 PHD_FILE: MSMg01no128_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:13 2005CHROMAT_FILE: MSMg01no128_p08.g1 PHD_FILE: MSMg01no128_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCAATCA
GGTTCCCCTGCTTCCCGACAGCTCAAGTCCTGGCCAAGCTGCCTCCCCAC
CCTGGCTCAGAGGGCACCGGACTCAGAGATGCAGGGCAGGCTCAGCTCCT
TCCAGTGCTGACACGGACTCCAGCAGCACCTTCACCAAAGCAGATCTGAG
AGGCCAGCGAGCTACAGGTATAAACACTGACTGTGGAACAACTACATACG
ACGCAGACCCAGTCACTCTCGTGGTGTCTGGGCAGATGGTGAATAGCAAA
ACAAACCGCCCCGCATAATAAAATCCGCTGTGATGCCACGTGAGGTCGTA
TAGCACAGCGCCAGTTTCAAATCTCATCTCTGCCTTGTACTAGCAAAATA
AAGTGGGTAACGTGGGAACGAAAAGTATTGTGCATATCAAAGGAGGGCAC
GTGATTATAAAGAACCCTATCACACAGCACAGCGCTTGTCTCCTAATATA
TGCCATACTACAACCAGCTAGCACAGGCATGCCAATCCCCGTAACTACCG
TAACTACCCTTTTTGTCCAAGTATCCTCCTCTTCAGAGGAGCCTTCCTGG
CTTCTCTCACATGAAGTGTATCCTCTCCTCCTCCCTCTGTTTTAGGAACC
TTTTTGTTGCACAGACCAGTCCCGTCTCCTGATTTCAGCTCTCCCTTAAC
CCTGTTTTACCCACTTATTCCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTATGTAATGGTTCCATGACACATGTACCGAGGATGATCTGATCC
CCTCAGATACCCTGGAGGGAGAGATGCCAAATTTCCCTACCTGTAAAGCC
CAGTTACATTAACACTGGAGAATACACGCATGCGCACATGTGCTGCAGGG
GCTGAGCTAGCTTATAAGTTTGGTCAGGACAGACTTCGTCTAGAAATAAT
AACTATAAATGCCTGTAGGTGTGTGGCTGAAGAGCCTGCATGTAAGAGAC
TTCATAACCTGTTCTTTCAGGTTGTAGATACTTGCTTCTGTTTTTCAACA
AACTGAAAACAACATAGAGAACTCCTATATGACATTCTTAATAACCACCA
CGTTTAAGCTAAAATGTTTACATTTTTAAGAACCGACTTATTTTATTCTA
TATATGAATGTTCTGCTTGTAGGTGGACCACTTGCACATCTGCTAGCCAA
TTAAAGCCTGATCCCCTGGAACTGGATTTATGAATTATTGCGAGCTGCTA
CCTGGCTGCTGGAAGCTAAATCTGAGTCTTCTGCTAGAGAATCACGTGAT
CTTAGCCACTGAACCATCTCCTCACCCCCTGTTTCTTAATATTATATGCC
CCGTGTGTCTAGGCCAAACTTCAGCCCCTTGCCCTGTACGCTATTCTTGT
GTTCCCGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_p08.g1 MSMg01no128_p08.g1 CHROMAT_FILE:
MSMg01no128_p08.g1 PHD_FILE: MSMg01no128_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:13 2005
         (213 letters)



>mm_chr4_45640400_45641012
          Length = 613

 Score =  381 bits (197), Expect = e-110
 Identities = 209/213 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtaatggttccatgacacatgtaccgaggatgatctgatcccctcagataccctgga 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tatgtaatggctccatgacacatgtaccgaggatgatctgatcccctcagataccctgga 354

                                                                       
Query: 61  gggagagatgccaaatttccctacctgtaaagcccagttacattaacactggagaataca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 353 gggagagatgccaaatttccctacctgtaaagcccagtcacattaacactggagaataca 294

                                                                       
Query: 121 cgcatgcgcacatgtgctgcaggggctgagctagcttataagtttggtcaggacagactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cgcatgcgcacatgtgctgcaggggctgagctagcttataagtttggtcaggacagactt 234

                                            
Query: 181 cgtctagaaataataactataaatgcctgtagg 213
           ||||||||||||| ||||| |||||||||||||
Sbjct: 233 cgtctagaaataagaactacaaatgcctgtagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)