Query= MSMg01no129_a20.b1 MSMg01no129_a20.b1 CHROMAT_FILE:
MSMg01no129_a20.b1 PHD_FILE: MSMg01no129_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:20 2005
(320 letters)
>mm_chr4_56950736_56951457
Length = 722
Score = 596 bits (308), Expect = e-175
Identities = 315/318 (99%), Gaps = 2/318 (0%)
Strand = Plus / Minus
Query: 4 ggaattctacaagatcaactgtaatttaaatatggtacttacatataacttttattttta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggaattctacaagatcaactgtaatttaaatatggtacttacatataacttttattttta 462
Query: 64 aaaaaactagttaaatgggggaattagaacagttcccaaaccaaaaattgtatgagtgtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaaaaactagttaaatgggggaattagaacagttcccaaaccaaaaattgtatgagtgtt 402
Query: 124 tctggtaaaaataaagatcta--tttttttttttaaaagttaaatggattttgaactttt 181
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctggtaaaaataaagatctatttttttttttttaaaagttaaatggattttgaactttt 342
Query: 182 gtatgtcttaaaacaatgtactttattaagtatataagtatcactgcctgggtttcaaat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtatgtcttaaaacaatgtactttattaagtatataagtatcactgcctgggtttcaaat 282
Query: 242 gcctatttaaacataactaaatgaagaaggaagacccaggcaggccacccatagcatcct 301
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 281 gcctatttaaacataactaaatgaaaaaggaagacccaggcaggccacccatagcatcct 222
Query: 302 gtctgtgccgtgtccgga 319
||||||||||||||||||
Sbjct: 221 gtctgtgccgtgtccgga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space: 221743
Effective search space used: 221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_a20.g1 MSMg01no129_a20.g1 CHROMAT_FILE:
MSMg01no129_a20.g1 PHD_FILE: MSMg01no129_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:20 2005
(629 letters)
>mm_chr4_56895596_56896617
Length = 1022
Score = 1089 bits (563), Expect = 0.0
Identities = 611/631 (96%), Gaps = 10/631 (1%)
Strand = Plus / Plus
Query: 1 agtgctgcctcctggccaagaaaacctggatgagctttcccaaggaaagacagctaaagt 60
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agtgctgcctcccggccaagaaaacctggatgagctttcccaaggaaagaaagctaaagt 260
Query: 61 gaaacaagcttagaaagcaattagccaacagtggccagacaacagtaggggg-gacagac 119
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gaaacaagcttagaaagcagttagccaacagtggccagacaacagtagggggtgacagac 320
Query: 120 aggtggcacgcatactgcatactacagcagccccaagggaagtgccagctcagaccctgg 179
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aggtggcacgcatact-------acagcagccccaagggaagtgccagctcagacccttg 373
Query: 180 tggtgagggtaaagggcaaggagagattcaaggactggataagggacaggacagcgactg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tggtgagggtaaagggcaaggagagattcaaggactggataagggacaggacagcgactg 433
Query: 240 agttaggacacacactcagggttggtgtgttcagggagacagagcatcagttataaacag 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 434 agttaggacacacactcagggttggtgtgttcagggagacagagcatcaatta-aaacag 492
Query: 300 atcagcttgcaagcctggaactatatggacatagagcaacttaatatttctaaactatgt 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 493 atcagcttgcaagcctggaactatatatacatagagcaacttaatatttctaaactatgt 552
Query: 360 cacctaagcatcctggaaaatactaataggttcagaacagtaatgcacaccagcgaagcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cacctaagcatcctggaaaatactaataggttcagaacagtaatgcacaccagcgaagcc 612
Query: 420 aggcctggtatatgccttttactcccaggactctggagggtcaaacaagtgaacttcagt 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aggcctggtacatgccttttactcccaggactctggagggtcaaacaagtgaacttcagt 672
Query: 480 gagttccaggcgagtcggggtacagagagagaccgtgtctcaaaaaaaccagaacagata 539
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 673 gagttccaggcgagtcgggctacagagggagaccgtgtctcaaaaaaaccagaacagata 732
Query: 540 aagataacac-tgatgtttttatcatgggattcagcacatggtaagtctcagcaaatgtt 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aagataacacatgatgtttttatcatgggattcagcacatggtaagtctcagcaaatgtt 792
Query: 599 agaagtgttgtttgtgttacttcttaaacag 629
|||||||||||||||||||||||||||||||
Sbjct: 793 agaagtgttgtttgtgttacttcttaaacag 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1022
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1012
Effective search space: 626428
Effective search space used: 626428
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
