BAC Information

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BAC

Clone NameMSMg01-130A18
Chromosome4 (Build37)
Map Location 144,898,658 - 144,898,944
singlet/doubletsinglet
Overlap geneTnfrsf8
Upstream geneLOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b
Downstream geneLOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A18.T7 (MSMg01no130_a18.b1)MSMg01-130A18.TJ (MSMg01no130_a18.g1)
ACCAG337901AG337902
length7131,188
length of high quality
(start - end)
288 (73 - 360)751 (128 - 878)
definitionCHROMAT_FILE: MSMg01no130_a18.b1 PHD_FILE: MSMg01no130_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:40 2005CHROMAT_FILE: MSMg01no130_a18.g1 PHD_FILE: MSMg01no130_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGACCTGCGCGGAAT
TCCTGTGCCATGCCTAAAAAGCACCACACTGTCTAGACTCTCCAGGCCCC
ACAATCAGGAGTCAAATAAACCTCTTTTCTAAAATTTAAAATACTGTTGT
TGTTGTTGATGATGATGATGGTGCTTCTATGTGCTCTGCGTGTGTGCTCG
CACGTGCGAGCGCACTTGCTCTCTGTGTGTATATGTATGTCTGTGTGTCA
CACACATGCCACAGTGCACACTTGTGGAGGTCAGAAGACAATATCCAGGT
ATCAGTTCCTTGCTTTTTTTTTTCATCTTAGAGCAGAGTCTTTCATTGTT
TCTGCTACTTATTTTCCTCCCCCCACCTCCCTTCTCATCTGGAATTATAG
TTGTATGCTGCCCCCACCTTGGAGATCTTACATGAGTTCAGGGGCTCAAA
CTCCAGGGCATCAGGCCTGTGTGATAAACACTTTCACCCACTGAATCATC
TTGTCAGCCCCAAATGAAACCTCTTTGAAGCACTTGGCCTTGTGTGTTTA
GTTACAATAACAAGTACATACCACTAGGCCACGTCTTCCATTTGCAATGC
CAGCAATGGAGGGCCAAATCCTCACACACATCCTTTCTTCCACATACTCT
CTAAGCTCTTCGCTGGAAGGGCTTGTGACATTAGACAGAGCTGACTCTTG
AAGGATTTCCCAT
NCCTGCCCTTNNNNAAAACATTGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATATTAAGATTGTCTTTGTTAG
NATTTCTCACATTCACTGCCTTTAAAAGGTTTCTCTCCCGCATGAAATTT
CTGATGAATACTAAGATGGGATTTTCGGGTAAAGAATTTGTCACATTCAC
TACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGCCTTCTCAGA
TTGCCTTTTTCAGTAAAGCAATTGTCACATTCACTGCATTTGTAAGGTTT
CTCTCCTGTATGAATTCTCTGATGAGATCTCAAATTAAATTTTTGGGTAA
AGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATT
CTCTGATTAATTCTCAGAGTGCCTTTTCTAGTAAAGCATTTGTCACATTC
ACTGCATTTGTAACGCCCCTCTCCTGTATGAATTCTCTGATGCCTTCTCA
GACTGCCTTTTTCAGTAAAGCATTTGTCACATCCACTGCATTTGTAAGGT
TTCTCTCCTGCATGAATTTTCTGATGAATATTAAGATGAGATTTTTGGGA
AAAGCATTTGTCACATTCAGTACATTTGTGAGGTGTATAATGGGGGGATT
CTAGAAACACATTGCTAGGCTTGTTACATTTAGAAGACTTCTCTTGAATA
TTCATGTGTTCAAGAACAATGTACTGGCTGTCTTGATCCATGACCTTCCC
ATACATTCCATATATGCAATGATTTCCTGAAAAAAAAAAAACGGGTGGGG
GGCAATTAGAGGTGACATGATTTACTTATATAAGGAGTAAGGGATTCAAT
AATCAGTGATCTCATGGATTTGTACTCTCAAAAGAGGTTTTTTTTCCTTT
TTTTTGAATCATTACATGTATCCTCAGAAGAACCTCAAATATGATTTATA
TCAAATGAATGGGAAAGAAAAAAAGCCTGCCCAATTTTTTTTTCAAATTT
TGAACCATACCCCCCCCCAAAAAATTGACCCCAAATTTTTCCCTTCCTTT
AAAAAAAAAAAAGGGCAAAAAATTGGTAAAAAAGCTTTATAGTAAAGGCC
TTTTTAAAAATGTGGGCCATAAAAAAGGCGAAACCCGCTCCAACCCTTGG
TATTTTTGAAGGGGGTCTTAATGGAAAGGATTTTAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a18.b1 MSMg01no130_a18.b1 CHROMAT_FILE:
MSMg01no130_a18.b1 PHD_FILE: MSMg01no130_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:40 2005
         (288 letters)



>mm_chr4_144898458_144899146
          Length = 689

 Score =  509 bits (263), Expect = e-148
 Identities = 281/291 (96%), Gaps = 9/291 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacactgtctagactctccaggccccacaatcaggagtcaaataaacctcttttctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accacactgtctagactctccaggccccacaatcaggagtcaaataaacctcttttctaa 260

                                                                       
Query: 61  aa-tttaaaatactgttgttgttgttgatgatgatgatggtgcttctatgtgctctgcgt 119
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttaaaatactgttgttgttgttgatgatgatgatggtgcttctatgtgctctgcgt 320

                                                                       
Query: 120 gtgtgctcgcacgtgcgagcgcacttgctctctgtgtgtatatgtatgtctgtgtgtcac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgctcgcacgtgcgagcgcacttgctctctgtgtgtatatgtatgtctgtgtgtcac 380

                                                                       
Query: 180 acacatgccacagtgcacacttgtggaggtcagaagacaatatccaggtatcagttcctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacatgccacagtgcacacttgtggaggtcagaagacaatatccaggtatcagttcctt 440

                                                              
Query: 240 gcttt----tttttttcatcttagagcagagtctttcattgtttctgctac 286
           |||||    ||     |||||||||||||||||||||||||||||||||||
Sbjct: 441 gctttcaccttc----catcttagagcagagtctttcattgtttctgctac 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)