BAC Information

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BAC

Clone NameMSMg01-131B17
Chromosome4 (Build37)
Map Location 15,995,347 - 15,995,570
singlet/doubletsinglet
Overlap genenone
Upstream geneEfcbp1, Tmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2
Downstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131B17.T7 (MSMg01no131_b17.b1)MSMg01-131B17.TJ (MSMg01no131_b17.g1)
ACCAG338693AG338694
length728723
length of high quality
(start - end)
287 (76 - 362)230 (85 - 314)
definitionCHROMAT_FILE: MSMg01no131_b17.b1 PHD_FILE: MSMg01no131_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:13 2005CHROMAT_FILE: MSMg01no131_b17.g1 PHD_FILE: MSMg01no131_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACATCTATXXXXXXXXXXXXXXXXXXXXXXCTATTCAAGAGGACCGCGG
AATTCCATACATTTCACAAAGAGACAGTGGTTTCCCTTTCCTCCCGGGTA
TACCTTCCCACCTTGTTTCAACTACCCCCAAAAATAAAAACAGAAATTTC
TATTTCCATATGCTCACTGGAGCATGGTCAAACTGGCAATGATCAGCCCC
TTAAAGATAACTGAGTACTTCTCCCACCCCAGCTCCACCAGAAGCCACCA
ATTGTAAAGAGCCACACTTTAGCATCTTTGTCACAATTTTGAAGGACTCT
CTTCAACAGCTTCCCACTGTACTGTTTCTTGGAGAGAAGAGGGAGGGGAG
GAGAGGTTGTTTTATAACCCTTCCCTGCCTCTCATTCTCAGTTATAAGTC
TTCCGTTATCACCTCCACTGAAAAAAAAACTTCCTTGTCCATGACAGACA
GAGGCAGCACAGAGCATGGACTTCCACATGGTTTCCAGTGGCAGCATAGA
CCACAGACACGGACCATAGAACACACAGCCTCCAGACAGCAACAAAGACC
AGCCAACATGGTCCCTGGTGGCAGCACGGACCATGGCAACCAGCACAGCC
CTGTCTGCAGCATGGACCACAGACACCAATATGGCCTCCGGTGGCAGCAT
AGACCGCGGAAATCTTTTAAGGAAGCATAATTTAGAAAACAAACCATTTT
TCACCTTGGCTATCTTGCTGTTGCACAA
NCCTGATGCTAGGNGAGGCTGGCGGCGCCTGGTTCAGAGAGGAGGTGAAC
TATAGAAGTTTCCAAAAAATCTCTGATTTCTACATGTCGTATACCAAATA
AAATTTAATTTTATTGCCCTATGAAGAAGCCTGTATGTGTTGGCTACAAA
GAAAGTCTGCGGGAGGGAGTTTCATGCAGGAGCAGGACGGAGCTGTGGAA
GACACGATGCCTGTTCTCAAGTTCAATATCACCTTTCCTGAGAAGAAAAT
ACTTCTCAAGCTTCTCTGCCAAAGAAAAGAATTAGAATAAAAGGTTAATT
TCTACAGCAGAAAATCCTTTTCTCTGACAGAATTAGAGTCATTCTGTAAG
AGATGAGGCTACCTTAATGTGTGGTGGGACTCCCTGTAGACAATAACAAG
TTTGCTCAACACTGCGTAAATATTATTGTCCCAGTGGGTGAGCACTCCTG
CCCACAAGTGTCCAGGAAAACAGAGGGACTAGAGAGGACAAAAGCATATT
TGTGTAGGTAAGAGGTGGATAACCTGTTCCAAGTGACTGCCAGAGTCAAG
AACCTGTCATTTTATCTTTGTCCACATTTCTATTAGGATACCCAAATTAG
CAACAGTGTTTTCTGGCTTCCCCCACAGGAAGTAGGTGCCACACCTTGGA
GATGGCTGTTACTTTCTTATGCTTTGGATCTCCCCTAAGCATTTGGCCTC
AAGGTTGTATACGTAATGCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_b17.g1 MSMg01no131_b17.g1 CHROMAT_FILE:
MSMg01no131_b17.g1 PHD_FILE: MSMg01no131_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:13 2005
         (230 letters)



>mm_chr4_15995143_15995772
          Length = 630

 Score =  368 bits (190), Expect = e-106
 Identities = 216/228 (94%), Gaps = 8/228 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtataccaaataaaatttaattttattg----ccctatgaagaagcctgtatgtgttggc 60
           |||||||||| |||| ||||||||| ||       ||||||||||||| |||||||||||
Sbjct: 205 gtataccaaa-aaaaattaattttaatgaaaa---tatgaagaagcctatatgtgttggc 260

                                                                       
Query: 61  tacaaagaaagtctgcgggagggagtttcatgcaggagcaggacggagctgtggaagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tacaaagaaagtctgcgggagggagtttcatgcaggagcaggacggagctgtgcaagaca 320

                                                                       
Query: 121 cgatgcctgttctcaagttcaatatcacctttcctgagaagaaaatacttctcaagcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgatgcctgttctcaagttcaatatcacctttcctgagaagaaaatacttctcaagcttc 380

                                                           
Query: 181 tctgccaaagaaaagaattagaataaaaggttaatttctacagcagaa 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgccaaagaaaagaattagaataaaaggttaatttctacagcagaa 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)