BAC Information

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BAC

Clone NameMSMg01-131N02
Chromosome4 (Build37)
Map Location 109,060,464 - 109,060,960
singlet/doubletsinglet
Overlap genenone
Upstream geneGpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144
Downstream gene4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131N02.T7 (MSMg01no131_n02.b1)MSMg01-131N02.TJ (MSMg01no131_n02.g1)
ACCAG339221AG339222
length777714
length of high quality
(start - end)
55 (71 - 125)590 (79 - 668)
definitionCHROMAT_FILE: MSMg01no131_n02.b1 PHD_FILE: MSMg01no131_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:10 2005CHROMAT_FILE: MSMg01no131_n02.g1 PHD_FILE: MSMg01no131_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCTATAATTGCGGCGCTAAACGACTCCTACTTTCCGAGGTGCGCGGA
ATCATTCTCTCTCCCTCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTCCTCTGTCTCCTCCCCACTCTCATTTTTAAAATAGGATCC
CACTGTATATCCCCAGCTGTGTGCGCCTCTCCTCAGATATCTCCCTGTAT
AGTATTGTGAGTGTGGCGCTATATTCACTTTTTTTAATAATTTGATCCAA
GATTTATTTTATTATTTTATTGATCTTTAATTTTTATTAGAGTTAGATTG
CTATTCTAAATGCCCCGTGTATTTTTACTGCTCAGACACCTACAGATCTT
GTCTCACTGTTTGATTGTCTTGCCTTCCCCTCTATGTGCCTAAAGCACCA
GTTCAAGAAATGATATGCCACAACCCCTCCAATACCACATACTCTCGCCC
CCACCCACACCCCTCTCCGATTTCGTTCTTGTCTTCCCCGCTCTATTTTT
CTCCTCATAAAATATCTTAACATTATATTATAAAAATAATGATATATATA
TATTCATTCACTGTTACTTTATTTTTTATATTTTCTCTTCCTTGCATTTT
TTTTCTTTTTATTCTCCTCTCTCACTAGACCTAATCCTTATATTATTTCT
ATTATTCCACACTTTCCATTTATTACAAATAAACCGATAATCAATATTCC
TCCATCCTACACCACTACACAATGCCATATATCTATCAACTTATTAATAT
ATAACACCATCAATTAAATCATATCAA
CCCCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCCATACAG
AGAAACCCTGGTCTCGAAAAAAAAAAAAAAAAAAAAAAAGGTATCAAGTC
TGGGCAGGGTATTACATGGGCTGTAATTCCAACTGCNTCACGAGGCAAGA
AGAATTGAACTGGGAGGTTAGCCCTGAGATAGCAAGACCTCCATCTAACA
AGAGATTGACCAAACTATCAAACTCATTAATGGAGGAAAATGAAGTTCAG
GGAATCAGAGGCTAAAGAACTTTCTTTTGTTGTTGTTCTTGCTTGTTTTT
AAAAAGGGTCCCTATGTAGCTCAGACTGACTTCAAACTTGCCACATAGAC
TAGGCTGGTCAGAACTTCGGACCTGTTTGGTTTTGCCTCCTGGATTAAAG
GTGTGCACAACCATGTATGACTTAAAGGAATTTCTCAAAAACAGCAGAAA
AGGGATTTGAGGTCAGGAACATCCTAAGAACCCAAGGCATGCGTCCTTAC
ACAGCCACGTGTTTCAGGCTCTATCTTTATGAAGATACATATCCTAACTT
CCTTTCAAAAAACAGGACAAGATAACAAAGTTTGTTTATAGAATTAGCAT
TCAACATTTATTTAAGTCTCTATAGTACTGTAAGAACCCTTTATACAGGA
TAATGTATGCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_n02.g1 MSMg01no131_n02.g1 CHROMAT_FILE:
MSMg01no131_n02.g1 PHD_FILE: MSMg01no131_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:10 2005
         (590 letters)



>mm_chr4_109060464_109061446
          Length = 983

 Score =  849 bits (439), Expect = 0.0
 Identities = 491/515 (95%), Gaps = 22/515 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggccat--acagagaaaccctggtctcgaaaaaaaaaaaaaaaaaaaa 58
           |||||||||||| |  ||  ||||||||||||| ||||||        ||||||||||||
Sbjct: 497 caggacagccagag--atacacagagaaaccct-gtctcg--------aaaaaaaaaaaa 449

                                                                       
Query: 59  aaaggtatcaagtctgggcagggtattacatgggctgtaattccaactgcntcacgaggc 118
           |||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 448 aaaggtatcaag-ctgggcagggtattacat-ggctgtaattccaactgc-tcacgaggc 392

                                                                       
Query: 119 aagaagaattgaactgggaggttagccctgagatagcaagacctccatctaacaagagat 178
            |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 391 -agaagaattgaact-ggaggttagccc-gagatagcaagacctccatctaacaagagat 335

                                                                       
Query: 179 tgaccaaactatcaaactcattaatggaggaaaatgaagttcagggaatcagaggctaaa 238
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 334 tgaccaaactatcaaactcattaat-gaggaaaatgaagttcagggaatcagaggctaaa 276

                                                                       
Query: 239 gaactttcttttgttgttgttcttgcttgtttttaaaaaggg--tccctatgtagctcag 296
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 275 gaactttcttttgttgttgttcttgcttgtttttaaaaagggtctccctatgtagctcag 216

                                                                       
Query: 297 actgacttcaaacttgccacatagactaggctggtcagaacttcggacctgtttggtttt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 actgacttcaaacttgccacatagactaggctggtcagaacttcggacctgtttggtttt 156

                                                                       
Query: 357 gcctcctggattaaaggtgtgcacaaccatgtatgacttaaaggaatttctcaaaaacag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gcctcctggattaaaggtgtgcacaaccatgtatgacttaaaggaatttctcaaaaacag 96

                                                                       
Query: 417 cagaaaagggatttgaggtcaggaacatcctaagaacccaaggcatgcgtccttacacag 476
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 95  cagaaaagggatttgaggtcaggaacatcctaagaacccaaggcacgcgtccttacacag 36

                                              
Query: 477 ccacgtgtttcaggctctatctttatgaagataca 511
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  ccacgtgtttcaggctctatctttatgaagataca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 983
Length adjustment: 10
Effective length of query: 580
Effective length of database: 973
Effective search space:   564340
Effective search space used:   564340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)