BAC Information

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BAC

Clone NameMSMg01-131P12
Chromosome4 (Build37)
Map Location 144,653,293 - 144,818,039
singlet/doubletdoublet
Overlap geneVps13d, Tnfrsf1b
Upstream genePramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneTnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131P12.T7 (MSMg01no131_p12.b1)MSMg01-131P12.TJ (MSMg01no131_p12.g1)
ACCAG339331AG339332
length734733
length of high quality
(start - end)
299 (74 - 372)611 (72 - 682)
definitionCHROMAT_FILE: MSMg01no131_p12.b1 PHD_FILE: MSMg01no131_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:21 2005CHROMAT_FILE: MSMg01no131_p12.g1 PHD_FILE: MSMg01no131_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,653,293 - 144,653,591)(144,817,429 - 144,818,039)
sequence
GCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATGCGC
GGAATTCTCAACCATCTCGTGACCAGGAAAGTTAATCTGCAACATTTTAA
AAACTTACTGTCTGGACTGGCAAGACGGTTCAGTGGGTAAAGGTAGAAGG
AGAGAACTGATTGTTGCAAGTTCTCCTCTGATCTCACACACACTGTGGTA
CCCAACCACACACATGAACACATGTATGAATAAACTGGTAAACTTACTTC
CAGCTCCTGATGAGTGTCTGGATTCCTCAATTTCTGCAGCTCCTGCTCTG
TAATGGGAAGTTCCTCCACTTCATATGATGAACGCTCACTTTTCCGCTGG
CAGAAGTCTGTTATCTGAAGTCAAAATAGAACAAAAGGAGGGCTCACACT
TCTACACCAACTATTGGTCAAGAGTCACTACATGCCCAGGAAAACTACTG
AAGCTAATGGCCTCCCATGCTGCTAGAGCAAGATCTGGGCACTAATGAAG
CAGGTGCAATTCTGAGTCTAGATAGCACTCTATCCAGCTAAACACCTTGG
GTGTCTCATAGAGTGTAGGTAGGCCTCCCAGAGCAAAAAAAGGTCTCACA
GAGCATGGACAATCTTGAGAGAAACAGGCAGGCCTCTGCAAGGTCAGTTC
CTCTAGCCTCTGTAAAGCATTTGACAGACTAATTCTGGTGAGGAGCAAAG
AAGCGCTGTATCAGAATACCCACGTAAGTACTCA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGATTTCATTTACTGGAGGCTTTGAGTCC
TGTGCTTGTGACCCAGTGGGCAGGAACACAGGGCAATGTCATCCTCCACA
GTCACAGCCAGGGGACAGTGGCTTTTCTAGTGACGAGCAGAGTGTCTTTA
CGAAGTTACAAGCTTAGAGTAGCAGGAACAGAGGAGACGAGCTGGTTCCA
GAAGAGAAAACCTTAAAGATTTGCCCTGTTACTCTTCTATCCTCCAGGCT
CTTAGGAGCCCTATGCCCTTGGTACTGACAGGCTACCAGACATGACGCCC
TTATAGCCACTTATATTTAGTACATCAGGATAGAGAATTTTAACCAACTA
TCAAGAAGACAGGAGCTAGCAAACCCATTCTCCCTTAAGTATTCTTGACT
GTTAATAGGTTTTTCGAGTGGTGGTGTTTCAACTACCTGGAGAGAGCAGA
GGGAAGATATGTTCAGAGGTAGAGAGATAGCTAGGGCCACCAGACATGCT
TCATCCCAGGGGCTTCCTGGCAAGGGTCTTCTGCTGAGACCTCTGGTCCT
TGCTTCCTCAGGCCAATATGTGAAACATTTCTGCAACAAGACCTCGGACA
CCGTGTGTGCGGACTGTGAGGTAAGCATGTATACCCAGGTCTGGAACCAG
TTTCGTACATGTTTGAGCTGCAGCTCTTCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_p12.b1 MSMg01no131_p12.b1 CHROMAT_FILE:
MSMg01no131_p12.b1 PHD_FILE: MSMg01no131_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:21 2005
         (299 letters)



>mm_chr4_144653093_144653791
          Length = 699

 Score =  547 bits (283), Expect = e-160
 Identities = 295/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaaagttaatctgcaacattttaaaaacttactgtctggactggcaagacggttcag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 caggaaagttaatctgcaacattttaaaaacttactgtctggactggcaagatggttcag 260

                                                                       
Query: 61  tgggtaaaggtagaaggagagaactgattgttgcaagttctcctctgatctcacacacac 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtaaaggtagaaggaaagaactgattgttgcaagttctcctctgatctcacacacac 320

                                                                       
Query: 121 tgtggtacccaaccacacacatgaacacatgtatgaataaactggtaaacttacttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggtacccaaccacacacatgaacacatgtatgaataaactggtaaacttacttccag 380

                                                                       
Query: 181 ctcctgatgagtgtctggattcctcaatttctgcagctcctgctctgtaatgggaagttc 240
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ctcctgatgcgtgtctggattcctcaatttctgcagctcctgctctgtaacgggaagttc 440

                                                                      
Query: 241 ctccacttcatatgatgaacgctcacttttccgctggcagaagtctgttatctgaagtc 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccacttcatatgatgaacgctcacttttccgctggcagaagtctgttatctgaagtc 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no131_p12.g1 MSMg01no131_p12.g1 CHROMAT_FILE:
MSMg01no131_p12.g1 PHD_FILE: MSMg01no131_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:21 2005
         (611 letters)



>mm_chr4_144817229_144818239
          Length = 1011

 Score = 1158 bits (599), Expect = 0.0
 Identities = 608/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatttcatttactggaggctttgagtcctgtgcttgtgacccagtgggcaggaacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 agatttcatttactggaggctttgagtcctgtgcttgtgacccagtgggcaggaacacag 752

                                                                       
Query: 61  ggcaatgtcatcctccacagtcacagccaggggacagtggcttttctagtgacgagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ggcaatgtcatcctccacagtcacagccaggggacagtggcttttctagtgacgagcaga 692

                                                                       
Query: 121 gtgtctttacgaagttacaagcttagagtagcaggaacagaggagacgagctggttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtgtctttacgaagttacaagcttagagtagcaggaacagaggagacgagctggttccag 632

                                                                       
Query: 181 aagagaaaaccttaaagatttgccctgttactcttctatcctccaggctcttaggagccc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 631 aagagaaaaccttaaagatttgtcctgttactcttctatcctccaggctcttaggagccc 572

                                                                       
Query: 241 tatgcccttggtactgacaggctaccagacatgacgcccttatagccacttatatttagt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tatgcccttggcactgacaggctaccagacatgacgcccttatagccacttatatttagt 512

                                                                       
Query: 301 acatcaggatagagaattttaaccaactatcaagaagacaggagctagcaaacccattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acatcaggatagagaattttaaccaactatcaagaagacaggagctagcaaacccattct 452

                                                                       
Query: 361 cccttaagtattcttgactgttaataggtttttcgagtggtggtgtttcaactacctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cccttaagtattcttgactgttaataggtttttcgagtggtggtgtttcaactacctgga 392

                                                                       
Query: 421 gagagcagagggaagatatgttcagaggtagagagatagctagggccaccagacatgctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gagagcagagggaagatatgttcagaggtagagagatagctagggccaccagacatgctt 332

                                                                       
Query: 481 catcccaggggcttcctggcaagggtcttctgctgagacctctggtccttgcttcctcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 catcccaggggcttcctggcaagggtcttctgctgagacctctggtccttgcttcctcag 272

                                                                       
Query: 541 gccaatatgtgaaacatttctgcaacaagacctcggacaccgtgtgtgcggactgtgagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gccaatatgtgaaacatttctgcaacaagacctcggacaccgtgtgtgcggactgtgagg 212

                      
Query: 601 taagcatgtat 611
            ||||||||||
Sbjct: 211 caagcatgtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)