Query= MSMg01no132_c16.b1 MSMg01no132_c16.b1 CHROMAT_FILE:
MSMg01no132_c16.b1 PHD_FILE: MSMg01no132_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:36 2005
(651 letters)
>mm_chr4_63360072_63361122
Length = 1051
Score = 1216 bits (629), Expect = 0.0
Identities = 644/649 (99%)
Strand = Plus / Minus
Query: 3 gaattcactccaccctctccgggaaaaacaacaaagaaaaaaaactctttaataagagta 62
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gaattcactccacccactcagggaaaaacaacaaagaaaaaaaactctttaataagagta 792
Query: 63 tgtgtccagttctggataatgccctaagaggaaccagccatgaatagaaatttttactaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgtgtccagttctggataatgccctaagaggaaccagccatgaatagaaatttttactaa 732
Query: 123 tttatacagaccttaggtttatacataacatatatactgtcatccttaaatctctttcag 182
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 731 tttatacagaccttaggtttatacataacatatacactgtcatccttaaatctctttcag 672
Query: 183 gtctcagccccagctcacactttgaacaatttaagtagagtcaggagactgcacgtctgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtctcagccccagctcacactttgaacaatttaagtagagtcaggagactgcacgtctgg 612
Query: 243 ccacttaggcaagtgaaagatttacaaagaaaagatattatcagagttacatcttaacta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ccacttaggcaagtgaaagatttacaaagaaaagatattatcagagttacatcttaacta 552
Query: 303 caccagtgctgttcttttcaaatagttgttactcggagacacctggaagaattatacttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caccagtgctgttcttttcaaatagttgttactcggagacacctggaagaattatacttt 492
Query: 363 cctgataagagcatgggaaacttaatggaaggtcagaactggttggttgtgacgggtgct 422
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 491 cctgataagagcatgggaaacttaatggaaggtcagaactggctggttgtgacgggtgct 432
Query: 423 gccccaattagagtcatgttatttgataaggggatgggcctaatggctggttgtaagtca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gccccaattagagtcatgttatttgataaggggatgggcctaatggctggttgtaagtca 372
Query: 483 aggttgtctcttttttgttatgggaatggaccctaaccagtggttaatcatggtgaacct 542
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 371 aggttgtctcttttttgttatgggaatggagcctaaccagtggttaatcatggtgaacct 312
Query: 543 ctccaaagtggaaggaagaatcccaaagttagtttccttggagagagggcactgagcccc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctccaaagtggaaggaagaatcccaaagttagtttccttggagagagggcactgagcccc 252
Query: 603 taagactgagtagaagttatcctgggagagacatggggatacaggagga 651
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taagactgagtagaagttatcctgggagagacatggggatacaggagga 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_c16.g1 MSMg01no132_c16.g1 CHROMAT_FILE:
MSMg01no132_c16.g1 PHD_FILE: MSMg01no132_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:36 2005
(622 letters)
>mm_chr4_63227057_63228078
Length = 1022
Score = 1062 bits (549), Expect = 0.0
Identities = 610/645 (94%), Gaps = 23/645 (3%)
Strand = Plus / Plus
Query: 1 agtatgctgggtgggaggaaggcattgtaagggagggaacagcatttgtgaaa------- 53
||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 178 agtatgctgggtgggaggaaggcattgtaagggagggaacaacatttatgaaagttcatg 237
Query: 54 ----------------ggatgtggtaccttcaaacagtgaatccaggcctgaagtccaca 97
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 238 gaacttagcacataatggatgtggtaccttcaaagagtgaatccaggcctgaagtccaca 297
Query: 98 gacccactgtgtggagatggatccaggcttgctgctcgctgcctgtgcaactttaggcag 157
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 298 gacccactgtgtggagatggatccaggcttgttgctcgctgcctgtgcaactttaggcag 357
Query: 158 gaggctcaagttctctgtgcttgtctgcaagagaggctgatggtcatgccagttctgtag 217
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 358 gaggctcaagttctctgtgcttgtctgcaagagaggctgatgttcatgccagttctgtag 417
Query: 218 ggcttccatcgggattacttgtgtgataccaaggagcatctgcagatattctgggatgca 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggcttccatcgggattacttgtgtgataccaaggagcatctgcagatattctgggatgca 477
Query: 278 acggcctctcagtgacccacagcacttactattggtgtggagggcaacggtgtggctctc 337
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 478 acggcctctcagtgacccacagcacttgctattggtgtggagggcaacggtgtggctctc 537
Query: 338 tccccaaagcccttgaggtttccacaggactagccaggaaatcacagacagggccacagg 397
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
Sbjct: 538 tccccagagcccttgaggtttccacaggactagccaggaaatcacaggcagggtcacacg 597
Query: 398 cagctcagtacagcccgaagctctccgagtttaacatgctgcttttgaaagaagactttg 457
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 598 cagctcagtacagcccgaagctctccgagtttaacacgctgctattgaaagaagactttg 657
Query: 458 cagacagcactgagcgccgtgctccagacaagctggctgtgctccacctcctcttccctt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cagacagcactgagcgccgtgctccagacaagctggctgtgctccacctcctcttccctt 717
Query: 518 ctctctctccctgctctctttcttcccgtcctttctcgtgtggcgtgtgcatgtgtatgt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ctctctctccctgctctctttcttcccgtcctttctcgtgtggcgtgtgcatgtgtatgt 777
Query: 578 atttatacttgcatgcctgtgcatgtggaggttgatgtcttgctg 622
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atttatacttgcatgcctgtgcatgtggaggttgatgtcttgctg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
