Query= MSMg01no132_g06.b1 MSMg01no132_g06.b1 CHROMAT_FILE:
MSMg01no132_g06.b1 PHD_FILE: MSMg01no132_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:53 2005
(618 letters)
>mm_chr4_41342216_41343228
Length = 1013
Score = 1122 bits (580), Expect = 0.0
Identities = 605/616 (98%), Gaps = 5/616 (0%)
Strand = Plus / Minus
Query: 3 gaattcctgagttatcccatcttcaggagccatagaggctctgcatgagtatagtaaggt 62
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 813 gaattcctgagttagcccatcttcaggagc-----aggctctgcatgagtatagtaaggt 759
Query: 63 tctcagtcctagcttgtcccttacgtgggtctgtagtgatttgcagactcttcagtcgtg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tctcagtcctagcttgtcccttacgtgggtctgtagtgatttgcagactcttcagtcgtg 699
Query: 123 tattgttgtgtgcatacttatattctcaggagacacttgtcttagttcaagtatagcact 182
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tattgttgtgtgcatgcttatattctcaggagacacttgtcttagttcaagtatagcact 639
Query: 183 catgttaaaggagactgccttttcctctattctctgccagagtaaaaaagaacttagaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 catgttaaaggagactgccttttcctctattctctgccagagtaaaaaagaacttagaat 579
Query: 243 cctagaccgacttttccttgttgtttgttgtttagctgtaggaaaggagtcacagacaca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cctagaccgacttttccttgttgtttgttgtttagctgtaggaaaggagtcacagacaca 519
Query: 303 gataaatatacagttaacgttaaatggtcatttacagggtgaaggaactaaagaaaggcg 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gataaatacacagttaacgttaaatggtcatttacagggtgaaggaactaaagaaaggcg 459
Query: 363 ttaagtgttgtgcttcagctaccagtcagaatcagacatctgcaaacgcctctccaaaac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttaagtgttgtgcttcagctaccagtcagaatcagacatctgcaaacgcctctccaaaac 399
Query: 423 gaattcagagctcccctgtcaccctccccggggacaagtgctcccccaaaaaagttaagc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaattcagagctcccctgtcaccctccccggggacaagtgctcccccaaaaaagttaagc 339
Query: 483 tgggacttcagcagtcacttactgtggccccaggccccacaaaagttaaagcccatcctt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgggacttcagcagtcacttactgtggccccaggccccacaaaagttaaagcccatcctt 279
Query: 543 tggccagtcatgttcccaacgtcccctttgcctctggacctaaaacccctggtaaaaaga 602
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 278 tggccagccatgttcccaacgtcccctttacctctggacctaaaacccctggtaaaaaaa 219
Query: 603 gtagttcccgagggag 618
||||||||||||||||
Sbjct: 218 gtagttcccgagggag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1013
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1003
Effective search space: 609824
Effective search space used: 609824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_g06.g1 MSMg01no132_g06.g1 CHROMAT_FILE:
MSMg01no132_g06.g1 PHD_FILE: MSMg01no132_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:54 2005
(593 letters)
>mm_chr4_41171851_41172843
Length = 993
Score = 1116 bits (577), Expect = 0.0
Identities = 589/593 (99%)
Strand = Plus / Plus
Query: 1 aagttcctaggaaacctcttctggcttcacaggccccttcatgcccatggcacacaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagttcctaggaaacctcttctggcttcacaggccccttcatgcccatggcacacaaaca 260
Query: 61 tacattcaagcccacacataaaactgcatatttaaaaaaagtcccaatgagaacaaatac 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tacattcaagcccacacataaaactgcatattttaaaaaagtcccaatgagaacaaatac 320
Query: 121 atcaagtgtaaacgtgtctccttcttgtgtcagaattgaagcttcgactgtcctgaaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaagtgtaaacgtgtctccttcttgtgtcagaattgaagcttcgactgtcctgaaact 380
Query: 181 tgcttgtagactaagctagccttgaactcaaaaatgtgctggtctcttgccttagtgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttgtagactaagctagccttgaactcaaaaatgtgctggtctcttgccttagtgttg 440
Query: 241 ggattaaggaagggtctgtcataacaccaaaagaactttaagactctttatattttctgt 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ggattaaggaagggtctgtcataacaccaaaagaactttaaaactctttatattttctgt 500
Query: 301 gttttccctacatgtacatatatgtaccatgtgcatgctgcctgcccagagtccagaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttttccctacatgtacatatatgtaccatgtgcatgctgcctgcccagagtccagaaga 560
Query: 361 gagcatcagattccctggaactggggttacaaatggctgtaagacatgatgaaaggcctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcatcagattccctggaactggggttacaaatggctgtaagacatgatgaaaggcctg 620
Query: 421 ggtgctggaaccaaacctaagacttttccaatagcagcaagtgctattagctgatgaacc 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtgctggaaccaaacctaagacttctccaatagcagcaagtgctattagctgatgaacc 680
Query: 481 atctctccagcacccccaactgtggatttgaatagaattatattcttcatatatggatat 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 atctctccagcacccccaactgtggatttgagtagaattatattcttcatatatggatat 740
Query: 541 agctaaagaaatgttttgttcacacttctttgtattatcactagagggggctg 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctaaagaaatgttttgttcacacttctttgtattatcactagagggggctg 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
