Query= MSMg01no132_i19.b1 MSMg01no132_i19.b1 CHROMAT_FILE:
MSMg01no132_i19.b1 PHD_FILE: MSMg01no132_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:05 2005
(678 letters)
>mm_chr4_82993168_82994245
Length = 1078
Score = 1050 bits (543), Expect = 0.0
Identities = 632/687 (91%), Gaps = 45/687 (6%)
Strand = Plus / Plus
Query: 3 gaattcactcaagaatcgccaagacatttgttacatatttattgattgtcagtaaatagc 62
||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 203 gaattcactcaagaaactctaagacattagttacatatttattgattgtcagtaaatagc 262
Query: 63 aagactgatgcaacaacatagaaaactgccattttcttgaatcctatattttaaagattt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagactgatgcaacaacatagaaaactgccattttcttgaatcctatattttaaagattt 322
Query: 123 atttatttagttcatgta--------cactgtctctgtcttcagacataccagaagagga 174
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 323 atttatttagttcatgtatgtgagtacactgtctctgtcttcagacataccagaagagga 382
Query: 175 cattggatcccaattacagatggttgtgagccaccatgtggctgctgggaattgaaccca 234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 cattggatcccaattacagatggttgtgagccaccatgtggctgctggggattgaaccca 442
Query: 235 ggacctctggaagagcagtcagtgctcttaaccgctgaatcatctctccacccagccctc 294
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 ggacctctggaagagcagtcagtgctcttaactgctgaatcatctctccacccagccctt 502
Query: 295 gaatcaatctctctctctctctctctctctctctctctctctctcttttggttttggttt 354
||||| ||||||||||||||||| |||||||||||
Sbjct: 503 gaatc--------------------------tctctctctctctcttt-ggttttggttt 535
Query: 355 tctagacaggatttctttgtataaccctagctgtgctgtcctggaacttactctgtagac 414
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 536 tctagacaggatttctttgtatagccctagctgt-----cctggaacttactctgtagac 590
Query: 415 caggctggccttgaacttggaaatcctcctgcctctgcctcccaagtgctgggattaaag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 caggctggccttgaacttggaaatcctcctgcctctgcctcccaagtgctgggattaaag 650
Query: 475 gcatgcgccaccactgcccagccagcccttgaatcttttttt---gggggtggtggtgtt 531
||||||||||||| |||||||||||| ||||||||||||||| ||||| || ||||||
Sbjct: 651 gcatgcgccaccattgcccagccagctcttgaatcttttttttttggggg-gg-ggtgtt 708
Query: 532 gagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctg 768
Query: 592 gcctcgaactcagcaatctgtctgcctctgcctcccaagtgctgggattaaaggcgtgcg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gcctcgaactcagcaatctgtctgcctctgcctcccaagtgctgggattaaaggcgtgcg 828
Query: 652 ccaccaccacccggcaaatcttatttt 678
|||||||||||||||||||||||||||
Sbjct: 829 ccaccaccacccggcaaatcttatttt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_i19.g1 MSMg01no132_i19.g1 CHROMAT_FILE:
MSMg01no132_i19.g1 PHD_FILE: MSMg01no132_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:05 2005
(589 letters)
>mm_chr4_83123908_83124895
Length = 988
Score = 1098 bits (568), Expect = 0.0
Identities = 583/588 (99%), Gaps = 2/588 (0%)
Strand = Plus / Minus
Query: 1 aactgttacagatttggttaatttgaaatgaagttggttactgttggagctggagagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 aactgttacagatttggttaatttgaaatgaagttggttactgttggagctggagagatg 786
Query: 61 gctcagtcgttaagagcactggctattctcccagaggtcaattccagcgcccacttgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gctcagtcgttaagagcactggctattctcccagaggtcaattccagcgcccacttgagg 726
Query: 121 gccacaagggtctgtaactcctgttccaggggatctgaagccctcatcagacatcatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gccacaagggtctgtaactcctgttccaggggatctgaagccctcatcagacatcatgca 666
Query: 181 cacataataccaatacacataaaacaagccatttgggggaaaaaaagattttatgttggg 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 665 cacataataccaatacacataaaacaagccatttggggg-aaaaaagattttatgttggg 607
Query: 241 ctgggattacaattcttggtacagtatttgcctataatgcaggaggctatagattcactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctgggattacaattcttggtacagtatttgcctataatgcaggaggctatagattcactc 547
Query: 301 cctagcaccatactaataaaggtggctaatgaagaaaatgagttaatatcaaagaaatga 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cctagcaccatactaacaaaggtggctaatgaagaaaatgagttaatatcaaagaaatga 487
Query: 361 ggatatatttaaagaattaaaaggcttttaaagttaatgatatttttatttcaaaatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggatatatttaaagaattaaaaggcttttaaagttaatgatatttttatttcaaaatgga 427
Query: 421 cttaaaatattttgattcaagcggggcagtggtggcgcatgccttaatcccagcacttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cttaaaatattttgattcaagcggggcagtggtggcgcatgccttaatcccagcacttgg 367
Query: 481 gaggcagaggcaggcggatttctgagttcgaggccagcctgatctgcagagtgagttcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaggcagaggcaggcggatttctgagttcgaggccagcctgatctgcagagtgagttcca 307
Query: 541 ggacagccagggctacacagagaaaccctgtctcaaaaaac-aaaaaa 587
||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 306 ggacagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaa 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
